Search Results for "bcftools-windows" - Page 2
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Showing 266 open source projects for "bcftools-windows"
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Megatron
Ongoing research training transformer models at scale
Megatron is a large, powerful transformer developed by the Applied Deep Learning Research team at NVIDIA. This repository is for ongoing research on training large transformer language models at scale. We developed efficient, model-parallel (tensor, sequence, and pipeline), and multi-node pre-training of transformer based models such as GPT, BERT, and T5 using mixed precision. Megatron is also used in NeMo Megatron, a framework to help enterprises overcome the challenges of building and... -
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TorchIO
Medical imaging toolkit for deep learning
TorchIO is an open-source Python library for efficient loading, preprocessing, augmentation and patch-based sampling of 3D medical images in deep learning, following the design of PyTorch. It includes multiple intensity and spatial transforms for data augmentation and preprocessing. These transforms include typical computer vision operations such as random affine transformations and also domain-specific ones such as simulation of intensity artifacts due to MRI magnetic field inhomogeneity... -
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Pyro
Deep universal probabilistic programming with Python and PyTorch
Pyro is a flexible, universal probabilistic programming language (PPL) built on PyTorch. It allows for expressive deep probabilistic modeling, combining the best of modern deep learning and Bayesian modeling. Pyro is centered on four main principles: Universal, Scalable, Minimal and Flexible. Pyro is universal in that it can represent any computable probability distribution. It scales easily to large datasets with minimal overhead, and has a small yet powerful core of composable... -
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DeepVariant
DeepVariant is an analysis pipeline that uses a deep neural networks
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. DeepVariant is a deep learning-based variant caller that takes aligned reads (in BAM or CRAM format), produces pileup image tensors from them, classifies each tensor using a convolutional neural network, and finally reports the results in a standard VCF or gVCF file. DeepTrio is a deep learning-based trio variant caller built on top of DeepVariant. DeepTrio... -
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Ludwig
A codeless platform to train and test deep learning models
Ludwig is a toolbox built on top of TensorFlow that allows to train and test deep learning models without the need to write code. All you need to provide is a CSV file containing your data, a list of columns to use as inputs, and a list of columns to use as outputs, Ludwig will do the rest. Simple commands can be used to train models both locally and in a distributed way, and to use them to predict on new data. -
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Axon
Nx-powered Neural Networks
Nx-powered Neural Networks for Elixir. Axon consists of the following components. Functional API – A low-level API of numerical definitions (defn) of which all other APIs build on. Model Creation API – A high-level model creation API which manages model initialization and application. Optimization API – An API for creating and using first-order optimization techniques based on the Optax library. Training API – An API for quickly training models, inspired by PyTorch Ignite. Axon provides... -
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oneDNN
oneAPI Deep Neural Network Library (oneDNN)
This software was previously known as Intel(R) Math Kernel Library for Deep Neural Networks (Intel(R) MKL-DNN) and Deep Neural Network Library (DNNL). oneAPI Deep Neural Network Library (oneDNN) is an open-source cross-platform performance library of basic building blocks for deep learning applications. oneDNN is part of oneAPI. The library is optimized for Intel(R) Architecture Processors, Intel Processor Graphics and Xe Architecture graphics. oneDNN has experimental support for the... -
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DeepSpeed MII
MII makes low-latency and high-throughput inference possible
MII makes low-latency and high-throughput inference possible, powered by DeepSpeed. The Deep Learning (DL) open-source community has seen tremendous growth in the last few months. Incredibly powerful text generation models such as the Bloom 176B, or image generation model such as Stable Diffusion are now available to anyone with access to a handful or even a single GPU through platforms such as Hugging Face. While open-sourcing has democratized access to AI capabilities, their application is... -
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Lightly
A python library for self-supervised learning on images
A python library for self-supervised learning on images. We, at Lightly, are passionate engineers who want to make deep learning more efficient. That's why - together with our community - we want to popularize the use of self-supervised methods to understand and curate raw image data. Our solution can be applied before any data annotation step and the learned representations can be used to visualize and analyze datasets. This allows selecting the best core set of samples for model training... -
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Python Outlier Detection
A Python toolbox for scalable outlier detection
PyOD is a comprehensive and scalable Python toolkit for detecting outlying objects in multivariate data. This exciting yet challenging field is commonly referred as outlier detection or anomaly detection. PyOD includes more than 30 detection algorithms, from classical LOF (SIGMOD 2000) to the latest COPOD (ICDM 2020) and SUOD (MLSys 2021). Since 2017, PyOD [AZNL19] has been successfully used in numerous academic researches and commercial products [AZHC+21, AZNHL19]. PyOD has multiple neural... -
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HanLP
Han Language Processing
HanLP is a multilingual Natural Language Processing (NLP) library composed of a series of models and algorithms. Built on TensorFlow 2.0, it was designed to advance state-of-the-art deep learning techniques and popularize the application of natural language processing in both academia and industry. HanLP is capable of lexical analysis (Chinese word segmentation, part-of-speech tagging, named entity recognition), syntax analysis, text classification, and sentiment analysis. It comes with... -
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dlib
Toolkit for making machine learning and data analysis applications
...Dlib's open source licensing allows you to use it in any application, free of charge. Good unit test coverage, the ratio of unit test lines of code to library lines of code is about 1 to 4. The library is tested regularly on MS Windows, Linux, and Mac OS X systems. No other packages are required to use the library, only APIs that are provided by an out of the box OS are needed. There is no installation or configure step needed before you can use the library. All operating system specific code is isolated inside the OS abstraction layers which are kept as small as possible. -
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Transformers
State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX
Hugging Face Transformers provides APIs and tools to easily download and train state-of-the-art pre-trained models. Using pre-trained models can reduce your compute costs, carbon footprint, and save you the time and resources required to train a model from scratch. These models support common tasks in different modalities. Text, for tasks like text classification, information extraction, question answering, summarization, translation, text generation, in over 100 languages. Images, for tasks... -
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Datasets
Hub of ready-to-use datasets for ML models
Datasets is a library for easily accessing and sharing datasets, and evaluation metrics for Natural Language Processing (NLP), computer vision, and audio tasks. Load a dataset in a single line of code, and use our powerful data processing methods to quickly get your dataset ready for training in a deep learning model. Backed by the Apache Arrow format, process large datasets with zero-copy reads without any memory constraints for optimal speed and efficiency. We also feature a deep... -
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Burn
Burn is a new comprehensive dynamic Deep Learning Framework
Burn is a new comprehensive dynamic Deep Learning Framework from Tracel AI built using Rust with extreme flexibility, compute efficiency and portability as its primary goals. Burn emphasizes performance, flexibility, and portability for both training and inference. Developed in Rust, it is designed to empower machine learning engineers and researchers across industry and academia. -
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Jittor
Jittor is a high-performance deep learning framework
Jittor is a high-performance deep learning framework based on JIT compiling and meta-operators. The whole framework and meta-operators are compiled just in time. A powerful op compiler and tuner are integrated into Jittor. It allowed us to generate high-performance code specialized for your model. Jittor also contains a wealth of high-performance model libraries, including image recognition, detection, segmentation, generation, differentiable rendering, geometric learning, reinforcement... -
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Deep Learning Models
A collection of various deep learning architectures, models, and tips
This repository collects clear, well-documented implementations of deep learning models and training utilities written by Sebastian Raschka. The code favors readability and pedagogy: components are organized so you can trace data flow through layers, losses, optimizers, and evaluation. Examples span fundamental architectures—MLPs, CNNs, RNN/Transformers—and practical tasks like image classification or text modeling. Reproducible training scripts and configuration files make it... -
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Vearch
A distributed system for embedding-based vector retrieval
Vearch is the vector search infrastructure for deep learning and AI applications. Vearch is a distributed vector storage and retrieval system which can be easily extended to billions scale. Vearch implements a high-performance, lockless real-time vector indexing subsystem that utilizes various optimization techniques to support millisecond vector update and retrieval. End-to-end one-click deployment. Through the module of the plugin, a complete default visual search system can be deployed... -
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PyG
Graph Neural Network Library for PyTorch
PyG (PyTorch Geometric) is a library built upon PyTorch to easily write and train Graph Neural Networks (GNNs) for a wide range of applications related to structured data. It consists of various methods for deep learning on graphs and other irregular structures, also known as geometric deep learning, from a variety of published papers. In addition, it consists of easy-to-use mini-batch loaders for operating on many small and single giant graphs, multi GPU-support, DataPipe support,... -
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tvm
Open deep learning compiler stack for cpu, gpu, etc.
Apache TVM is an open source machine learning compiler framework for CPUs, GPUs, and machine learning accelerators. It aims to enable machine learning engineers to optimize and run computations efficiently on any hardware backend. The vision of the Apache TVM Project is to host a diverse community of experts and practitioners in machine learning, compilers, and systems architecture to build an accessible, extensible, and automated open-source framework that optimizes current and emerging... -
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AutoGluon
AutoGluon: AutoML for Image, Text, and Tabular Data
AutoGluon enables easy-to-use and easy-to-extend AutoML with a focus on automated stack ensembling, deep learning, and real-world applications spanning image, text, and tabular data. Intended for both ML beginners and experts, AutoGluon enables you to quickly prototype deep learning and classical ML solutions for your raw data with a few lines of code. Automatically utilize state-of-the-art techniques (where appropriate) without expert knowledge. Leverage automatic hyperparameter tuning,... -
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Rubix ML
A high-level machine learning and deep learning library for PHP
Rubix ML is a free open-source machine learning (ML) library that allows you to build programs that learn from your data using the PHP language. We provide tools for the entire machine learning life cycle from ETL to training, cross-validation, and production with over 40 supervised and unsupervised learning algorithms. In addition, we provide tutorials and other educational content to help you get started using ML in your projects. Our intuitive interface is quick to grasp while hiding alot... -
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Rhino
On-device Speech-to-Intent engine powered by deep learning
Rhino is Picovoice's Speech-to-Intent engine. It directly infers intent from spoken commands within a given context of interest, in real-time. The end-to-end platform for embedding private voice AI into any software in a few lines of code. Design with no limits on top of a modular platform. Create use-case-specific voice AI models in seconds. Develop voice features with a few lines of code using intuitive and cross-platform SDKs. Deliver voice AI everywhere: on-device, mobile, web browsers,... -
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Techniques
Techniques for deep learning with satellite & aerial imagery
This repository is a comprehensive, curated collection of deep learning techniques and best practices specifically applied to satellite and aerial imagery. It covers everything from preprocessing and annotation to model architectures and open datasets. The guide includes code snippets, links to research papers, and hands-on tools, making it valuable for researchers, engineers, and enthusiasts working in remote sensing and geospatial AI. -
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Metaflow
A framework for real-life data science
Metaflow is a human-friendly Python library that helps scientists and engineers build and manage real-life data science projects. Metaflow was originally developed at Netflix to boost productivity of data scientists who work on a wide variety of projects from classical statistics to state-of-the-art deep learning.
