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mystic-crypt is designed as a Java library that can be used for simple and complex encryption and decryption. The source code for the library is available under https://github.com/astrapi69/mystic-crypt For demonstration what the library can do there is a graphical client: The source code for the ui is available under https://github.com/astrapi69/mystic-crypt-ui

StrongKey CryptoCabinet (SKCC) 2.0 is a FIDO-enabled (fidoalliance.org) web application built using Regulatory Compliant Cloud Computing (RC3) architecture (http://bit.ly/rc3infoq). It encrypts files/objects of any type or size, and stores the ciphertext either to public/private clouds—AWS, Azure, Eucalyptus—or local/network drives, while keeping cryptographic keys safe and secure OUTSIDE the cloud. CryptoCabinet leverages the StrongKey CryptoEngine (SKCE)—another FOSS on this site—to perform FIDO U2F strong authentication, encryption/decryption, digital signatures, and cloud integration. ...

HcryptoJ (Historical cryptology in Java) is a Java based programming library for implementing and analyzing historical ciphers. HcryptoJ is designed to support research and teaching in historical cryptography and computer science. Licensed under GPL.

The Moonbounce API is a set of high level objects that encapsulate pieces of the Bouncycastle lightweight crypto API. Moonbounce significantly simplifies RSA key generation, signing, encryption/decryption and verification of both byte arrays and files.