FormatCheck screens flat files looking for violations in the format of the data. It uses a set of XML files that define the rules for each file format. The Swing front-end allows the user to run the verification, view and print the errors.
Project MOVED to Codehaus New location is http://esper.codehaus.org The Esper project aims to provide a general-purpose event processing facility in Java for complex event processing of real-time, high throughput data streams.
BioMa is a specimen based Biodiversity database Manager. It is designed to store, organize, and manipulate biodiversity-related scientific data, either for the purposes of museums, scientific collections, or research projects.
PyTablet is a self organizing DB for semi-structured data. PyTablet behave like a huge persistable dictionary where keys are ID and values are dictionary-like objects that can link each other and contain simple values.
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Kura is a complete, professional system for the handling of linguistic data, especially fieldwork data from small-corpus languages. It allows users to enter texts in any language and analyze those texts
Yabman is a tool for managing bibliographic references. Its key features are a quality user interface, a carefully designed data model, and sophisticated three-state hierarchical reference labeling. It is currently usable but in a pre-alpha stage.
XSDB XML is to DATA as HTML is to DOCUMENT. Publish and combine data as easily as HTML format and web browsers publish and view documents. Implementations in Python, javascript, java, C#/.NET.
db_flay generates a simple, productive web interface for Postgresql databases. The target user is a secretary. db_flay lets users view, edit, copy, and delete data in multiple databases. A Plone-integrated version, plonedbflay, is also available.
This tool generates Data Access Objects and Value Objects for PHP4/MySQL web applications. This greatly improves the readability of PHP scripts that use a MySQL database. Requires Python.
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BACMan is a Microsoft Access based application designed for the management and analysis of hybridization data related to the high throughput screening of large insert genomic libraries associated with physical mapping projects.
A cgi program written in Python that turns HTTP GET and POST queries into SQL queries, runs them, turns the results into XML, and then returns the XML as the response to the HTTP query. It also supports returning a single BLOB as the whole response.
Sqltoolbox is a collection of database manipulation tools allowing viewing, editing, and querying of data across different database platforms and operating systems.
This framework allows the definition of attributes, entities and relations as used in entity-relationship (ER) models. It will then handle input and representation of data appropriately.
pyXLReader is a multiplatform Python library for reading Excel compatible spreadsheets (.xls). Based on JExcelApi by Andy Khan (http://www.andykhan.com).
This is a lightweight database system to support bioinformatics data mining. See BMC Bioinformatics. 2005 Mar 24; 6(1): 72 for the first publication. It supports large-scale data mining and data mining tools.
mssql2mysql is a python script used to create a SQL dump from a Microsoft SQL server that is ready to use with MySQL.
Supports Schema and data dumping, including Primary Keys for each table, allows to dump all data or just a small portion of it
NavDB is aimed at providing a database or means of creating a database of vector data representing U.S. Roads. The goal is to provide a versatile datasource for GPS Navigation software.
TAS (Transcription Analysis System) is a multi-tier framework for running parameterized SQL queries. Users can analyze new data or new combinations of data with a few clicks in a GUI. Potentially complex/repetitive database interaction is all automated
FramerD is a distributed semi-structured object database originally developed at MIT. It provides an internationalized Scheme-based scripting language, built-in text analysis tools, and special support for web scripting.
A mechanism for identifying, acquiring, transforming, and serving data from multiple geographically diverse, heterogeneous data sets from a common data portal. This work is funded by a NASA Advanced Information Systems Technology (AIST) grant.
DesktopTools is a collection of small utillities which help to make your daily life easier. Since the tools themself are rather small (projectwise) I keep them not as individual projects, but have them under this collective name.
Development of a multi platform application designed to allow the web access flow of any kind of data but keep the things simple, customizable and secure.
YAML (tm) is a straight-forward data serilization language, offering an alternative to XML where markup (named lists and mixed content) are not needed. YAML borrows ideas from rfc822, SAX, C, HTML, Perl, and Python.
JavaMatch is an engine that can search inside a runtime Java data structures, and look for objects that best match the criteria that you specify. The extensive query mechanism allows for highly customizable tuning of your match queries.