mx is a Ruby/Rails code base with broad application in evolutionary biology, it includes general functionality for matrix handling, sequence management, ontology construction, specimen handling, taxonomic catalogs, taxonomic descriptions and more
Ruby Research Wiki (RRiki) can be used to keep notes and organize references for research. It uses a browser interface, an intuitive plain text formatting language (markdown), and facilities to cross-reference and hierarchically organize notes
Law Leecher is a multi-threaded web crawling tool which extracts laws from the EU law database PreLex (http://ec.europa.eu/prelex/). It's written in Ruby.
A database schema and web application to archive, search, share, and download data of maximum body sizes of different taxonomic groups during the history of life on earth.
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LabDiary is a program for managing laboratory experiments in a sophisticated way. It is very easy to use - you can link experiments logically with each other, associate files to an experiment and structure all your data.
Transmute is an online translation tool for close ended questions. Originally designed to me used in a medical interview, it hosts a variety of questions and responses correlated with their translations in any number of language.
This is a way of creating virtual libraries. I catalogue the books (or DVDs etc.) that I have. My friends do the same. As well as allowing me to organise myself easily is also means that if I'm after a book I can easily find which of my friends has it.