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mx is a Ruby/Rails code base with broad application in evolutionary biology, it includes general functionality for matrix handling, sequence management, ontology construction, specimen handling, taxonomic catalogs, taxonomic descriptions and more
Ruby Research Wiki (RRiki) can be used to keep notes and organize references for research. It uses a browser interface, an intuitive plain text formatting language (markdown), and facilities to cross-reference and hierarchically organize notes
REMO == Remo Edits Makello Online: you can -- either with a webbrowser or a face-to-face Ruby application -- define SQL tables, links & indexes. REMO turns this into the framework of an application to manage the data (first sales data, so Makello).