Microarray Explorer (MAExplorer) is a Java microarray data-mining bioinformatics program.
It includes data management, graphics, statistics, clustering, reports, gene data-filtering, user
written MAEPlugins, documentation, tutorials, demo data.
Kura is a complete, professional system for the handling of linguistic data, especially fieldwork data from small-corpus languages. It allows users to enter texts in any language and analyze those texts
Yabman is a tool for managing bibliographic references. Its key features are a quality user interface, a carefully designed data model, and sophisticated three-state hierarchical reference labeling. It is currently usable but in a pre-alpha stage.
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The project will produce a small standalone Java application which will allow a user to convert ESRI Shapefiles (.shp) to the Google Earth KML format. This will allow ESRI Shapefile points, lines, and polygons to be viewed in Google Earth.
The rapid accumulation of human mutation data has led to the idea of establishing a national/ethnic database in Turkey endorsed by HUGO-MDI/HGVS. The interdisciplinary hmut-tr project initiated in 1995 aims to host this valuable data and information.
ISSU (pronounced issue) an Intelligent System Specification Unit, a new approach to thinking, computing, and the Internet. A free Ebook called Beyond the Information Age available at www.vias.org/beyinfoage/ will give you knowledge of ISSU.
MyGCAT: My Genome Collection With Assigned Taxonomy provides for the management of extremely large sequence databases and allows for the creation of taxon specific BLAST databases. Primariliy a set of PERL scripts and a HTML interface to a MySQL database
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Thetis is a Java (OS-independent) application written to allow the linguistic and statistical analysis of the Homeric and Hesiodic Epic. Current achievement is the creation of a complete (and free) Thesaurus of the Homeric and Hesiodic poems.
This is a lightweight database system to support bioinformatics data mining. See BMC Bioinformatics. 2005 Mar 24; 6(1): 72 for the first publication. It supports large-scale data mining and data mining tools.
Musmap is a web interface to UMN mapserver. It provides users and profiles management, advanced queries and selections, automatic decodification of columns with joins, easy-to-use configuration (colors, ...)... and so on.
JudoScript is a general-purpose, Java scripting, multi-domain scripting tool/language. It combines the powers of declarative scripting for many modern tasks and general object/procedural programming. It is simple, intuitive, practical and powerful.
PSIMAP is the Protein Structural Interactome MAP, a map of all the domain level protein-protein interactions in the Protein Data Bank (PDB). PSIsoft is an archive of the software used to generate and analyse PSIMAP.
Crackleback is a Java servlet framework for back-office business systems. Its goal is to address 90% of a system's function points, to cut development costs by 90%, and to permit the business analyst--not the programmer--to build 90% of the system.
CGNS++ is an object oriented interface to provide access to CGNS (CFD General Notation System) databases. It is similar to the existing C and FORTRAN interfaces provided by www.cgns.org, but uses an object oriented abstraction of the underlying SIDS.
graphite: a portable graphics library, written in Java, JOGL and Postscript that allows rapid generation of high-quality graphs using an efficient, compact Java engine.
OpenEMed is a distributed healthcare and medical information framework based on open standards including those of HL7 and the healthcare taskforce of the OMG. These standards include identity management, observation access, access, and terminology.
KnowledgeFrame is a proven, mature Java framework for agile design and development of sophisticated business database applications based on live metadata and live business rules, using a declarative approach. Links to RETS 1.7 protocol.
DB Schema Viewer is an Eclipse plugin that builds a graphical view of an existing database. Reverse Engineering is performed through JDBC. The most popular databases (MySQL, PostgreSQL and Firebird) are currently supported. The UI is build around GEF.
TSE is a test bed for a web service approach to federating taxonomic name databases. Put in English, it takes your query and talks to a number of different databases, asking each one whether they contain that name.
bdb is a Bibliography DataBase. It is written in PHP and requires MySQL,
web server and web browser. bdb can work under almost any operating system. With bdb one can easily add items to the database, search for information and generate reports.
TAS (Transcription Analysis System) is a multi-tier framework for running parameterized SQL queries. Users can analyze new data or new combinations of data with a few clicks in a GUI. Potentially complex/repetitive database interaction is all automated