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Database in PHP is incompatible with OO paradigm and complicates the process of store/retrieve information from the system objects. Salvi's ObjectDB is an ORM solution to help programmers to manage the database using classes instead complex queries.
A database and a web front end for physiologic data on animal feeding, developed with PostgreSQL and Django at NESCent (http://www.nescent.org) for Mammalian Feeding Working Group (http://www.feedexp.org).
Current development of the codebase is on Github at http://github.com/NESCent/feedingdb.
We aim to develop a JDBC Driver to OGSA-DAI middleware. OGSA-DAI implements and define a common way to acess Data Resource, as well coordinate the use of them. A JDBC Driver should extend possibilities, and make it easy to use, in a client perspective.
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Ruby Research Wiki (RRiki) can be used to keep notes and organize references for research. It uses a browser interface, an intuitive plain text formatting language (markdown), and facilities to cross-reference and hierarchically organize notes
DOCDB is a document server. It stores information about books, articles, inproceedings, etc. in a database. Documents can also be uploaded. The docdb can export bibtex entries of the documents as
well as provide access to the documents.
Free software tools released by the Virtual Institute for Microbial Stress and Survival, including WIST (a toolkit for LIMS development) and PCAPStore (a file repository for LIMS).
The R-tree Library aims to implement a generic, portable, easy-to-use collection of R-tree variants. Tested to work under Linux and Windows, using GNU, Intel and VC++ compilers, and also implementing many variants already, we are well underway.
EHR/EMR cross-platform electronic medical record application
EHR/EMR cross-platform software for the design, implementation and use of autonomous, open, database models for multilingual medical knowledge management systems from primary care to continuing care.
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PerfParse. Storage and analysis of binary performance data produced by Nagios. High quality accurate graphs of live data from standard Nagios plugins. Permanent history of plugin results with advanced analysis tools.
MOLGENIS can be used to generate databases for life science experiments (micrroarray, mass spectrometry, genomics) having a web user interface, csv exchange format, and programmatic interfaces (web services, rest, and r-project). See NatRevGen 8.
XPN is relies on a non relational native XML database, where XML documents are stored in a compressed form and indices enables fast access to structure and content, thus enabling a fast evaluation of XQuery queries.
Wikipedia Concept Association Map (WCAM) is new approach for textual knowledge representation and understanding. All concepts and associations are stored in a graph database for better performance and easy distribution.
DBOW is a database compiler-compiler or front-end. It takes table definitions in a relatively high-level language and prepares C, C++, PHP, Perl (etc) functions for manipulating the database. It will also produce SQL table data for MySQL.
The D2RQ API provides access to relational database content from within the Jena and Sesame RDF frameworks. D2R Server is a Semantic Web server and SPARQL endpoint based on D2RQ. Both use a declarative language for mapping database schemata to RDF.
A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.
SPIDR (Space Physics Interactive Data Resource) is a distributed database and application server network, built to select, visualize and model historical space weather data. SPIDR is a web-application and a grid of data mining web-services.
An SQL handler to interface multiple databases data to the OpeNDAP Hyrax (BES) server. Written in C++, it uses unixODBC to query DB and can be dynamically extended to use proprietary ODBC API driver in many easy ways. It is bundled with scripts to ge
primeHandle is a set of data management tools in support of the PrIMe Initiative (http://primekinetics.org). primeHandle includes graphical user interfaces for searching through data collections, editing and submitting data to the PrIMe Data Depository.
Egothor is a high-performance, full-featured text search engine written entirely in Java. It is a technology suitable for nearly any application that requires full-text search.
Science Laboratory Inventory and Order Management System
Science Laboratory Inventory and Orders Management System: suitable for school's science laboratories to manage stored items (chemical and equipment) and adds a way to order these items on-line for science lessons and practical experiments. It's PHP/MySQL web application which needs to be installed in one server and runs in any client's browser with no modification at all. It's a multi-user system with different privileges. Demo is available at: http://sciencelabinv.sourceforge.net/demo/