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TM4 is a suite of applications for managing and analyzing microarray data. TM4 provides data storage and tracking, image analysis, normalization, data filtering, clustering and statistical analysis capabilities. Includes MADAM, Spotfinder, MIDAS, and MeV.
Mirage implements an complete 100% transparent Object Relational mapping for Java. It builds the database schema incrementally, to support incremental development and refactoring as it happens in Extreme Programming.
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Pymerase is a tool intended to generate a python object model, relational database, and an object-relational model connecting the two. However it has been extended to also output webpages and can be easily extended to output whatever else you might like.
This is a modification of the CTN Software released by the Mallinckrodt Institute of Radiology and the RSNA. It is to be used as a teaching webserver for a radiology department. Please read the license in the documents segment.
DataBaseOne is a proyect for the generation of a small and "not that robust" Database Engine in C++ oriented to small and medium applications like games, and small and medium companies. The final product should be a static library OS Independent.
OntoCardio is an initiative to build ontologies for the legacy Cardio Database (Resource of bioinformation on cardiovascular diseases). SMI's Protege and its OWL plug-in has been adopted as the ontology construction and programming framework.
Atomatrix is a multithreaded execution system of atomic matrices with a dynamic compiler and a network eviron. It is the next generation object-orientated environment. XML, MUD-OO CLI, GnucDNA support, windows and many subprojects are built-in.
The VPDM framework is a softwareengineering meta-model to allow encapsulated views to be superimposed onto schema. We can forward engineer systems using this approach.
A translator that converts information models written in ISO-10303-11 EXPRESS to DAML+OIL/OWL (e2ont). The software extends the OSEXPRESS parser. DAML+OIL or OWL code is obtained using the Jena2 Semantic Web framework.
To provide a bunch of useful applications for daily use. The first of those applications was donated by NIH\'s DECA, it\'s called REX and is a Request/Bug tracker. All applications will be Struts 1.1 and greater based.
idyuts is \"I Dare You to Use This Shell\"; a pre-hibernate approach to replacing an ORM written with jython functors into a pure-Java language command pattern. The \"pipeline codegen artifacts\" are simple IoC templates, and trivial to adapt
Hardhats is dedicated to fostering a virtual community for the worldwide users of the VISTA (DHCP) software.
This sofware is available directly to the public under the Freedom of Information Act.
Pattern recognition software package. It includes several classification and clustering algorithms. It can read data from a
set of images, an ASCII file or a JDBC connection. A small TCP data server with its corresponding JDBC driver is included.
an object-oriented API to access spatial data from Perl scripts, defines a set of classes and conventions to access spatial data independent of underlying file format or access method, based on OpenGIS Abstract Specification (see http://www.opengis.org)
Project Galileo at Sourceforge.net aims to provide developers a unique opportunity to develop open source software for an on-line telescope for schools across the UK. See http://www.projectgalileo.org.uk for more details.
SchemaDoc is a XML-based markup language for documenting XML schemas. The work products include both the vocabulary and a set of tools for combining it with the schema source (e.g. a DTD) to produce documentation in HTML, XML DocBook, LaTeX, etc.
Tk Tutorial: programs and (terse) notes on the Tk GUI toolkit, using Perl/Tk. Learn about references and anonymous arrays by using them. Use templates to build GUIs with menus, buttons, etc. Includes tips on tools, development.
This toolkit facilitates easier connections between stored data, intermediate data, and data presented to users in Java applications. The classes are abstracted as much as possible to allow wide use for various types of programs.