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mx is a Ruby/Rails code base with broad application in evolutionary biology, it includes general functionality for matrix handling, sequence management, ontology construction, specimen handling, taxonomic catalogs, taxonomic descriptions and more
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Ontology MApping FRAmework Toolkit allows to create semantic relations between two (source and target) ontologies, and apply such relations in translating source ontology instances into target ontology instances.
The MatrixBrowser project presents a new approach for visualizing and exploring large networked information structures which may represent, for instance, linked information resources or metadata structures such as ontologies.
D2R MAP is a declarative language to describe mappings between relational database schemata and OWL ontologies. This D2R processor implements the D2R mapping language and exports data from a relational database as RDF, N3, N-TRIPLES or as Jena models.
OntoCardio is an initiative to build ontologies for the legacy Cardio Database (Resource of bioinformation on cardiovascular diseases). SMI's Protege and its OWL plug-in has been adopted as the ontology construction and programming framework.
Thema is an XML based data format (DTD) for thesauri, glossaries, lexicons, conceptual maps etc. up to ontologies. It contains publishing tools to convert into HTML, RDF etc. and to read different formats and is has a connection to the Semantic Web.
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