Showing 93 open source projects for "informatics"

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  • 1
    A lightweight, browsing-based, 100% Python, federated data integration framework. Users may create custom schemas for disparate sources, query and expand results across sources to find related data; for use in fields such as bioinformatics and datamining
    Downloads: 0 This Week
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  • 2
    A Python library bringing together utilities I've written over the years for work in bioinformatics and biostatistics, which should be generally applicable outside these fields as well. Focuses on string processing, DBI, and math.
    Downloads: 0 This Week
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  • 3
    ArrayPipeLine is a web-based Laboratory Information Management system, using MySQL, Perl CGI and R. It enables high-throughput analysis of microarray data, providing automation of data handling, and rapid creation and implementation of analysis pipelines
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  • 4
    Venndiagram comparison for ProteinExperiments in the PRIDE Database
    Downloads: 0 This Week
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  • 5
    A web-based groupware application for Linux with PHP, MySQL, Apache, SSL oriented to forensic laboratories. Applicazione scritta per Linux con PHP, MySQL, Apache, SSL, finalizzata alla condivisione di dati nei laboratori forensi.
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  • 6
    The Genomic Diversity and Phenotype Connection (GDPC) written in JAVA uses web services to make XML formatted data publicly available. The GDPC Browser (front-end GUI) can access these services, and other applications can use the API.
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  • 7
    The Genomic Diversity and Phenotype Data Model (GDPDM) captures molecular and phenotypic diversity data. MySQL databases are used to implement the schema. This project develops software tools (written in Java, Perl, etc.) associated with this model.
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  • 8
    Evaluation of STICS simulation tool models.
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  • 9
    Bioinformatics tools and applications for the analysis of genomic sequence data.
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  • 10
    INDUS is a porject for knowledge acquisition and data integration from heterogeneous distributed data, particularly from bio-informatics databases
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  • 11
    BioGraphNet is a 'sandbox' within BioMOBY, comprising a common standard and collection of services for sharing distributed protein-interaction network information. We now serve several network data types, and encourage others to participate.
    Downloads: 0 This Week
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  • 12
    BioMa is a specimen based Biodiversity database Manager. It is designed to store, organize, and manipulate biodiversity-related scientific data, either for the purposes of museums, scientific collections, or research projects.
    Downloads: 0 This Week
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  • 13
    Avian Freeware Suite (AFS) provides two things: Developers with libraries for Java Swing Widgets, XML handling, Fortran95 and Pascal; End users (Medical students, doctors, scientists) with productivity tools they can use (quizzes, XML databasing & PDF)
    Downloads: 0 This Week
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  • 14
    A neuroscientific knowledge management system for the published literature
    Downloads: 1 This Week
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  • 15
    Microarray Explorer (MAExplorer) is a Java microarray data-mining bioinformatics program. It includes data management, graphics, statistics, clustering, reports, gene data-filtering, user written MAEPlugins, documentation, tutorials, demo data.
    Downloads: 25 This Week
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  • 16
    The rapid accumulation of human mutation data has led to the idea of establishing a national/ethnic database in Turkey endorsed by HUGO-MDI/HGVS. The interdisciplinary hmut-tr project initiated in 1995 aims to host this valuable data and information.
    Downloads: 0 This Week
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  • 17
    BACMan is a Microsoft Access based application designed for the management and analysis of hybridization data related to the high throughput screening of large insert genomic libraries associated with physical mapping projects.
    Downloads: 0 This Week
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  • 18
    UniDPI stands for Unified Database of Protein Interactions which gives access to documented interactions in several independent and heterogeneous databases disseminated on the web.
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  • 19
    MyGCAT: My Genome Collection With Assigned Taxonomy provides for the management of extremely large sequence databases and allows for the creation of taxon specific BLAST databases. Primariliy a set of PERL scripts and a HTML interface to a MySQL database
    Downloads: 0 This Week
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  • 20
    This is a lightweight database system to support bioinformatics data mining. See BMC Bioinformatics. 2005 Mar 24; 6(1): 72 for the first publication. It supports large-scale data mining and data mining tools.
    Downloads: 0 This Week
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  • 21
    PSIMAP is the Protein Structural Interactome MAP, a map of all the domain level protein-protein interactions in the Protein Data Bank (PDB). PSIsoft is an archive of the software used to generate and analyse PSIMAP.
    Downloads: 0 This Week
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  • 22
    CSBI is a component based framework that allows for inter-component data sharing and access. GINY is an Open Source Graph Library.
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  • 23
    Microarray analysis database
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  • 24
    TSE is a test bed for a web service approach to federating taxonomic name databases. Put in English, it takes your query and talks to a number of different databases, asking each one whether they contain that name.
    Downloads: 0 This Week
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  • 25
    TAS (Transcription Analysis System) is a multi-tier framework for running parameterized SQL queries. Users can analyze new data or new combinations of data with a few clicks in a GUI. Potentially complex/repetitive database interaction is all automated
    Downloads: 0 This Week
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