The SplitDB project gives practitioners of statistical tools for inferring phylogenies a way to store, retrieve and visualize important properties, like convergence, of the overwhelmingly large resulting tree-sets produced by these tools.
ChemAzTech is a Web chemistry software (for Linux server) connected to a MySQL database (L.A.M.P. software) which is storing molecules. Manage your chemical database, with product's properties. Draw, edit molecules and record it !
A database and a web front end for physiologic data on animal feeding, developed with PostgreSQL and Django at NESCent (http://www.nescent.org) for Mammalian Feeding Working Group (http://www.feedexp.org).
Current development of the codebase is on Github at http://github.com/NESCent/feedingdb.
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OpenDWS is a hobby project to create a datawarehousing suite that: - Can work on different OS - Federates databases - Can run Data analyses using plugins on different databases This project is programmed in Python Language.
A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.
The SBS1 Explorer application features a nice GUI allowing a variety of queries to any SBS-1 flights database without having to install the BaseStation software. Simply get a database file (usually BaseStation.sqb) and open it in SBS1 Explorer.
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HOT is a package of Matlab and Octave compatible functions that manage thermodynamic data for a wide range of species. Functions calculate almost all the most common thermodynamic quantities of mixtures.
Python users may also want to look at PYroMat at https://chmarti1.github.io/PYroMat/index.html
ConDEnSE (Confidential Data Enabled Statistical Exploration) will be a web-based environment for statistical analysis of confidential data from various database sources, based on Plone and R, and using the Jackknife method of confidentiality protection.
A lightweight, browsing-based, 100% Python, federated data integration framework. Users may create custom schemas for disparate sources, query and expand results across sources to find related data; for use in fields such as bioinformatics and datamining
A Python library bringing together utilities I've written over the years for work in bioinformatics and biostatistics, which should be generally applicable outside these fields as well. Focuses on string processing, DBI, and math.
Crow - Computational Representation Of Whatever. A platform for the integration and mining of complex and distributed data. Represents cross-linked semantic web documents as a network of software objects and offers easy ways to filter, and sort them.
Database abstraction and object-relational framework for Python based on the basictypes and basicproperties modules, and including reverse-engineering of schemas from live databases. Preliminary Zope DA is also available.
WikiPDF is a mediawiki extension based on Wiki2PDF that adds PDF/LaTeX features to mediawiki. Wiki2PDF is a python script to convert multiple articles of a mediawiki based wiki (pre-configured to use with www.wikipedia.org) to a single LaTeX or PDF file.
AGTK is a suite of software components for building tools for annotating linguistic signals,
time-series data which documents any kind of linguistic behavior (e.g. audio, video).
The internal data structures are based on annotation graphs.
KML is a knowledge base with support of logical modeling. Advanced model is used to represent knowledge as a set of statements similar to natural language sentences. This project hosts a set of model storage library and server (vrb-ols) and clients.
Moodss is a modular monitoring application, composed of a GUI and a daemon, which supports any device or process for which a module can be developed. Complete dashboards with graphical viewers, thresholds, SQL database archiving, ... can be managed.
BioMa is a specimen based Biodiversity database Manager. It is designed to store, organize, and manipulate biodiversity-related scientific data, either for the purposes of museums, scientific collections, or research projects.
The Flamenco search and browse interface framework uses hierarchical faceted metadata to allow users to both refine and expand queries, while maintaining a consistent representation of a collection and seamlessly integrating keyword queries.
Kura is a complete, professional system for the handling of linguistic data, especially fieldwork data from small-corpus languages. It allows users to enter texts in any language and analyze those texts