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XLibraryDisplay is an intuitive sequence analysis program optimized for protein engineering. It is ideal for all directed evolution platforms including phage, ribosome, and yeast display. Analysis can be quickly done on hundreds to thousands of sequences. Best suited for Sanger sequencing.
Requirements: Microsoft Windows XP, 7, 8, or 10 and Excel 2007, 2010, 2013, or 2016
Described in Stafford et al JCIM 2014: http://pubs.acs.org/doi/abs/10.1021/ci500362s
Free, easy to use, excel tool to create data and process flow diagrams with table data
In separate excel sheets you define items(nodes), lines(edges) and grouping(clusters)
Separate definition of node, edge and cluster styles
Graph settings sheet
Output control sheet
Examples and readme are included in the zip file
Get it working:
-Install graphviz (http://graphviz.org/Download.php)
-Download Excel to Graphviz
-Open one of the ExcelToGraphviz workbooks
-Go to sheet settings...
Tools for multivariate data visualization, exploration and analysis.
You may also like some newer work:
http://createdatasol.com/
Project imDEV is an application of RExcel, which seamlessly integrates Excel and R for tasks focused on multivariate data visualization, exploration, and analysis. Interactive modules for dimensional reduction (imPCA), prediction (imPLS), feature selection, analysis of correlation (imCorrelations) and generation of networked structures (imGraph) provide an integrated environment for systems level analysis of multivariate data.
Controversial ideas of Williamson, Margulis & others suggest speciation by hybridizing might be more common than originally thought.
Taking this concept to the nth degree & assuming that indeed, speciation mostly occurs by hybridizing events, not the accumulation of mutations or genetic drift, here is a catalogueoflife2gedcom converter. It allows the tree of life to be displayed as a human genealogy tree with hybridizing events depicted as "marriages." The idea then is that mutation...
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