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On Linux, the best way to install Julia is to use the Generic Linux Binaries. And while all Linux users love manually downloading, unpacking, and linking their software, this script does it for you.
Software tools facilitating the task of surveying architecture (real-time control, parametric modelling, use of digital photographs, processing of point clouds...).
Until now, those tools were mainly used to document cultural heritage sites/buildings
Charmol is a cross-platform GUI/command-line based program for making high-quality pictures of molecular structures, nowadays working on Linux, MacOS and Windows. As output, it produces POV-Ray rendered images or files in VRML format.
Charmol is capable of making pictures containing:
- from small- to large-size molecules
- more molecules together (different settings possible)
- orbitals using molden and fchk files (GTO functions up to 'h' angular momentum supported)
- surfaces using gaussian cube files (also color-mapped surfaces according to potential)
- schematic representation of vibrations using arrows
- user-defined arrows representing vectorial properties
- measuring gauges
- combinations of these features (more orbitals together, orbitals and arrows together etc.)
...
TurboVNC is a high-performance, enterprise-quality version of VNC based on TightVNC, TigerVNC, and X.org. It contains a variant of Tight encoding that is tuned for maximum performance and compression with 3D applications (VirtualGL), video, and other image-intensive workloads. TurboVNC, in combination with VirtualGL, provides a complete solution for remotely displaying 3D applications with interactive performance. TurboVNC's high-speed encoding methods have been adopted by TigerVNC and...
High Dynamic Range Visual Difference Predictor (HDR VDP) is a perceptual metric that can predict whether differences between two images are visible to the human observer or not.
Semi-automatic neurite tracing with tera-bytes of imaging data.
Fast Neurite Tracer (FNT) is a tool for semi-automated neurite tracing.
FNT can handle big imaging data such as fMOST data.
It can also process other types of light imaging data in general.
FNT is designed to be
* accurate in tracing (each tracing step needs your confirmation),
* fast (operations using computer mouse is reduced with automatic searching),
* scalable (large volume data of tera-bytes in size are supported).
Other features include
* the results can be exported to...
...ADOMA is a commandline program that can easily be used in pipelines.
For more information check the README.md in the Files section.
How to cite ADOMA:
Zaal, D. and Nota, B. (2016), ADOMA: A CommandLine Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083
http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract
Ccide reads a source program, in one of several programming languages, expands all embedded decision tables, and generates
the new, expanded source.
Ccidew processes C language programs directly. The script, ccide, uses
ccidew and m4, to process BASIC, JAVA, CC, C++, BASH, QB, VB, and EX(euphoria), source files containing embedded decision tables.
Ccide checks all conditions once and only once, avoiding side effects.
Ccide checks tables for conflicts and other...
CDS plots and analyzes output from numerical climate models. It is capable of comparing climate model simulations and/or observational data. It consists mostly of a series of MathWorks Matlab language scripts and reads data in NetCDF format.
Very basic RRDtool tutorial. It is an example in that way. It can save you a couple of days of discovering on your own. In any case you have to read the manual _before_ that ;)