Search Results for "dox-tool" - Page 2

...ADOMA is a commandline program that can easily be used in pipelines. For more information check the README.md in the Files section. How to cite ADOMA: Zaal, D. and Nota, B. (2016), ADOMA: A Command Line Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083 http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract

MicroView is a 2D/3D image viewer and analysis tool. It is written in Python and uses VTK for all of its graphical capabilities.

COV2HTML provides an easy and 'in home' web interface for biologists that allows coverage visualization of the NGS alignment needed for the analysis. It combines two essential processes: (i) MAP2COV, a tool that converts the huge NGS mapping or coverage files into light specific coverage files which contains genetic elements informations. (ii) COV2HTML, a visualization interface allowing a real-time analysis of data with selected criteria. Thus this interface offers a visualization of NGS mapping coverage data (DNA-seq, RNA-seq, ChIP-seq and TSS) performed in different prokaryotic organisms (bacteria, viruses...) or different experimental conditions (mutant versus wild type strains or different growth states…) facilitating studies.

NanoCap is a generic application for the construction of low energy fullerene and capped nanotube structures. It provides an ideal tool to accompany the study of finite carbon molecules using computer simulation. The implementation involves a standalone application which includes a GUI and allows for dynamic visual inspection through 3D rendering. In addition, the NanoCap core libraries can be used in custom Python scripts that enabled the user to produce structures in bulk or to include the structure generation routines into pre-existing code.

Plotmeister is a data exploration tool. It parses your ASCII data and generates a simple (text-based) table format. You can modify this table and eventually create nice looking figures.

SloppyPlot is a tool to import scientific datasets and create 2D plots from this data. There is a gnuplot postscript export available.

Tool for annotating (bike race) videos with data from GPS devices to display time, distance, speed, power, HR, CAD, elevation, laps. Outputs a series of SVG files importable as image sequence into the OpenShot Video editor as overplayed video track.

OpenPIV is an initiative of scientists to develop a software, algorithms and methods for the state-of-the-art experimental tool of Particle Image Velocimetry (PIV) which are free, open source, and easy to operate.

Metropolis is a visualization tool for TRANSIMS traffic simulation output. It specializes in viewing the dynamic outputs of the micro-simulator, such as vehicle motion and other time-varying data.

A tool for visualization, classification, and quantification of three-dimensional secondary ion mass spectrometry data.

This is a neat little tool to visualize binary data in a graphical form. It's really interesting to look at different types of files.

Garmon (Gnome/GTK+ Car Monitor) is a tool that lets you connect to an OBD-II compliant vehicle using an ELM327 based scanning device. It supports monitoring live and freeze frame data as well as reading and clearing DTCs. It is written in python.

pyLastFM graph is commandline tool for creating a nice looking graph time graph from Last.fm profile data. It uses the audioscrobbler.net XML interface and can create very high resolution output images.

A 3D data visualization tool, specializing in the display of robotically collected point, range, and volumetric data. Provides a very flexible framework for different file formats and visualization parameters.

VisIt is an interactive parallel visualization and graphical analysis tool for viewing scientific data.

This is a tool to organize and present complex, interrelated ideas visually in different ways. It aims to be many tools all at the same time -- outliner, mindmapping and concept mapping tool, PIM, project manager and tracker, literate programming editor,

Python library and command line tool to generate maps in PDF format an place objects on them.

A GUI built using Python 2.3+, wxPython and PyOpenGL for the mathematical modeling and visualization of landscape and streamflow systems. This visualization tool uses the Channel-Hillslope Integrated Landscape Development (CHILD) model as its backend.

Zherlock has now changed name to SciCraft and no longer hosted on sourceforge. Visit our new site at http://www.scicraft.org

Rocksnake takes localities from geological mapping projects and plots them in 2D, over an optional basemap. Each locality has all the standard geology notebook contents and photos attached to it which can then be viewed from Rocksnake.

Matlab/Octave to Python conversion facility. The tool will take existing scripts and convert them to Python. Also includes Python bindings to Octave and a small runtime support library. Built on top of Numeric Python extensions.

Gimini is a mindmap creation tool in Python + wxPython.

A tool to visualize interactively huge amounts of eventdata. Uses an innovative hierarchical zoomlens scaling from quarters down to 50 ms.

General plugins for the QGis tool http://www.qgis.org. The plugins will be mostly written in python language. The idea is to contribute to the GIS open source software community.

Agaseous-NES is a graphic app for creating integrated circuit layers. Developers can import Agaseous for SuperWikia Alpha .AJA (Agaseous Joint Application) text files to automate & create asauna plates. Also imports and intergrate Adobe .PSD files.