Open Source Python Data Visualization Software - Page 2
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Python Data Visualization Software
View 448 business solutionsBrowse free open source Python Data Visualization Software and projects below. Use the toggles on the left to filter open source Python Data Visualization Software by OS, license, language, programming language, and project status.
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geemap
A Python package for interactive geospaital analysis and visualization
A Python package for interactive geospatial analysis and visualization with Google Earth Engine. Geemap is a Python package for geospatial analysis and visualization with Google Earth Engine (GEE), which is a cloud computing platform with a multi-petabyte catalog of satellite imagery and geospatial datasets. During the past few years, GEE has become very popular in the geospatial community and it has empowered numerous environmental applications at local, regional, and global scales. GEE provides both JavaScript and Python APIs for making computational requests to the Earth Engine servers. Compared with the comprehensive documentation and interactive IDE (i.e., GEE JavaScript Code Editor) of the GEE JavaScript API, the GEE Python API has relatively little documentation and limited functionality for visualizing results interactively. The geemap Python package was created to fill this gap. -
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A free, industrial quality library for simulating articulated rigid body dynamics - for example ground vehicles, legged creatures, and moving objects in VR environments. It's fast, flexible & robust. Built-in collision detection.
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GemGIS
Spatial data processing for geomodeling
GemGIS is a Python-based, open-source geographic information processing library. It is capable of preprocessing spatial data such as vector data (shape files, geojson files, geopackages,…), raster data (tif, png,…), data obtained from online services (WCS, WMS, WFS) or XML/KML files (soon). Preprocessed data can be stored in a dedicated Data Class to be passed to the geomodeling package GemPy in order to accelerate the model-building process. Postprocessing of model results will allow export from GemPy to geoinformation systems such as QGIS and ArcGIS or to Google Earth for further use. -
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Kale
Kubeflow’s superfood for Data Scientists
KALE (Kubeflow Automated pipeLines Engine) is a project that aims at simplifying the Data Science experience of deploying Kubeflow Pipelines workflows. Kubeflow is a great platform for orchestrating complex workflows on top Kubernetes and Kubeflow Pipeline provides the mean to create reusable components that can be executed as part of workflows. The self-service nature of Kubeflow make it extremely appealing for Data Science use, at it provides an easy access to advanced distributed jobs orchestration, re-usability of components, Jupyter Notebooks, rich UIs and more. Still, developing and maintaining Kubeflow workflows can be hard for data scientists, who may not be experts in working orchestration platforms and related SDKs. Additionally, data science often involve processes of data exploration, iterative modelling and interactive environments (mostly Jupyter notebook). -
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PySR
High-Performance Symbolic Regression in Python and Julia
PySR is an open-source tool for Symbolic Regression: a machine learning task where the goal is to find an interpretable symbolic expression that optimizes some objective. Over a period of several years, PySR has been engineered from the ground up to be (1) as high-performance as possible, (2) as configurable as possible, and (3) easy to use. PySR is developed alongside the Julia library SymbolicRegression.jl, which forms the powerful search engine of PySR. The details of these algorithms are described in the PySR paper. Symbolic regression works best on low-dimensional datasets, but one can also extend these approaches to higher-dimensional spaces by using "Symbolic Distillation" of Neural Networks, as explained in 2006.11287, where we apply it to N-body problems. Here, one essentially uses symbolic regression to convert a neural net to an analytic equation. Thus, these tools simultaneously present an explicit and powerful way to interpret deep neural networks. -
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ipycytoscape
A Cytoscape Jupyter widget
A widget enabling interactive graph visualization with cytoscape.js in JupyterLab and the Jupyter Notebook. -
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missingno
Missing data visualization module for Python
Messy datasets? Missing values? missingno provides a small toolset of flexible and easy-to-use missing data visualizations and utilities that allows you to get a quick visual summary of the completeness (or lack thereof) of your dataset. Just pip install missingno to get started. This quickstart uses a sample of the NYPD Motor Vehicle Collisions Dataset dataset. The msno.matrix nullity matrix is a data-dense display which lets you quickly visually pick out patterns in data completion. At a glance, date, time, the distribution of injuries, and the contribution factor of the first vehicle appear to be completely populated, while geographic information seems mostly complete, but spottier. The sparkline at right summarizes the general shape of the data completeness and points out the rows with the maximum and minimum nullity in the dataset. This visualization will comfortably accommodate up to 50 labelled variables. -
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QUAST
Quality Assessment Tool for Genome Assemblies
QUAST performs fast and convenient quality evaluation and comparison of genome assemblies. It is maintained by the Gurevich lab at HIPS (https://helmholtz-hips.de/en/hmsb). For the most up-to-date description, please visit http://quast.sf.net. Below are just some highlights. QUAST computes several well-known metrics, including contig accuracy, the number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper and manual). A comprehensive analysis results in summary tables (in plain text, tab-separated, and LaTeX formats) and colorful plots. The tool also produces web-based reports condensing all information in one easy-to-navigate file. QUAST and its three follow-up papers (MetaQUAST, Icarus, QUAST-LG) papers were published in Bioinformatics; the last paper (WebQUAST) is out in Nucl Acid Research. -
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QtiPlot is a user-friendly, platform independent data analysis and visualization application similar to the non-free Windows program Origin.
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Grafana: The open and composable observability platformGrafana is the open source analytics & monitoring solution for every database.
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PyMOL Molecular Graphics System
PyMOL is an OpenGL based molecular visualization system
The Open-Source PyMOL repository has been moved to github: https://github.com/schrodinger/pymol-open-source We still use the pymol-users mailing list here on sourceforge. Please subscribe for community support: https://pymol.org/maillist (Note: SourceForge email newsletter and special offers are optional and can be unchecked) The PyMOL community wiki has its own home: https://pymolwiki.org/ -
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GPlates
Interactive visualization of plate tectonics.
GPlates is a plate-tectonics program. Manipulate reconstructions of geological and paleo-geographic features through geological time. Interactively visualize vector, raster and volume data. PyGPlates is the GPlates Python library. Get fine-grained access to GPlates functionality in your Python scripts. -
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BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.
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BertViz
BertViz: Visualize Attention in NLP Models (BERT, GPT2, BART, etc.)
BertViz is an interactive tool for visualizing attention in Transformer language models such as BERT, GPT2, or T5. It can be run inside a Jupyter or Colab notebook through a simple Python API that supports most Huggingface models. BertViz extends the Tensor2Tensor visualization tool by Llion Jones, providing multiple views that each offer a unique lens into the attention mechanism. The head view visualizes attention for one or more attention heads in the same layer. It is based on the excellent Tensor2Tensor visualization tool. The model view shows a bird's-eye view of attention across all layers and heads. The neuron view visualizes individual neurons in the query and key vectors and shows how they are used to compute attention. -
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HyperTools
A Python toolbox for gaining geometric insights
HyperTools is a library for visualizing and manipulating high-dimensional data in Python. It is built on top of matplotlib (for plotting), seaborn (for plot styling), and scikit-learn (for data manipulation). Functions for plotting high-dimensional datasets in 2/3D. Static and animated plots. Simple API for customizing plot styles. Set of powerful data manipulation tools including hyperalignment, k-means clustering, normalizing and more. Support for lists of Numpy arrays, Pandas dataframes, text or (mixed) lists. Applying topic models and other text vectorization methods to text data. HyperTools is designed to facilitate dimensionality reduction-based visual explorations of high-dimensional data. The basic pipeline is to feed in a high-dimensional dataset (or a series of high-dimensional datasets) and, in a single function call, reduce the dimensionality of the dataset(s) and create a plot. -
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electricityMap
A real-time visualisation of the CO2 emissions of electricity
Real-time visualization of the Greenhouse Gas (in terms of CO2 equivalent) footprint of electricity consumption built with d3.js and mapbox GL. Real-time data is defined as a data source with an hourly (or better) frequency, delayed by less than 2hrs. It should provide a breakdown by generation type. Often fossil fuel generation (coal/gas/oil) is combined under a single heading like 'thermal' or 'conventional', this is not a problem. Citizens should not be responsible for the emissions associated with all the products they export, but only for what they consume. Consumption-based accounting (CBA) is a very important aspect of climate policy and allows assigning responsibility to consumers instead of producers. Furthermore, this method is robust to governments relocating dirty production to neighboring countries in order to green their image while still importing from it. -
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GDL - GNU Data Language, a free IDL (Interactive Data Language, see http://ittvis.com/idl/) compatible incremental compiler.
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GXSM
Scanning Probe Microscopy Controller and Data Visualization Software
GXSM -- Gnome X Scanning Microscopy: A multi-channel image and vector-probe data acquisition and visualization system designed for SPM techniques (STM,AFM..), but also SPA-LEED/LEED/LEEM data analysis. A plug-in interface allows any user add-on data-processing and special hardware and instrument support. Latest: NC-AFM and related explorative methods as SQDM can be configured. High-Speed external PAC-PLL hardware option with digital DSP link. Based on several hardware options it supports a commercially available DSP hardware and provided also Open Source Code for all the low level signal processing tasks and instrument controls in a most flexible and adaptable manner. All latest software is available via SVN only or Live Demo/Install CD: http://www.ventiotec.de/linux/GXSM-Linux.iso -
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Make sure to download from the link below and not the big giant button. I'm not sure how to fix that, so if you know!
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Every Door
A dedicated app for collecting thousands of POI for OpenStreetMap
The best OpenStreetMap editor for POIs and entrances. The best app for on-the-ground surveying for OpenStreetMap! Add shops and amenities, survey benches and trees, collect addresses, or use them as walking papers. This editor does not make you think. Just go to a mall, and start Every Door. You'll see mapped shops around you: tap on the checkmark for any that are still there, and add shops that are not on the map. That's the entire process: you can keep your entire town up-to-date thanks to this simple editor. There is also a micromapping mode for verifying and adding benches and street lamps. And an entrance mode for adding building attributes and entrances, which are merged automatically into building contours. -
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Run Page
Make your own running home page
GitHub Actions manages automatic synchronization of runs and generation of new pages. Gatsby-generated static pages, fast. Support for Vercel (recommended) and GitHub Pages automated deployment. React Hooks. Mapbox for map display. Supports most sports apps such as nike strava. Automatically backup gpx data for easy backup and uploading to other software. -
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Sweetviz
Visualize and compare datasets, target values and associations
Sweetviz is an open-source Python library that generates beautiful, high-density visualizations to kickstart EDA (Exploratory Data Analysis) with just two lines of code. Output is a fully self-contained HTML application. The system is built around quickly visualizing target values and comparing datasets. Its goal is to help quick analysis of target characteristics, training vs testing data, and other such data characterization tasks. Shows how a target value (e.g. "Survived" in the Titanic dataset) relates to other features. Sweetviz integrates associations for numerical (Pearson's correlation), categorical (uncertainty coefficient) and categorical-numerical (correlation ratio) datatypes seamlessly, to provide maximum information for all data types. Automatically detects numerical, categorical and text features, with optional manual overrides. min/max/range, quartiles, mean, mode, standard deviation, sum, median absolute deviation, coefficient of variation, kurtosis, skewness. -
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pydna
Clone with Python! Data structures for double stranded DNA
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning. Planning genetic constructs with many parts and assembly steps, such as recombinant metabolic pathways, are often difficult to properly document as is evident from the poor state of documentation in the scientific literature. The pydna python package provide a human-readable formal description of cloning and genetic assembly strategies in Python which allow for simulation and verification. Pydna can be used as executable documentation for cloning. -
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XCSoar
... the open-source glide computer
XCSoar is a tactical glide computer for Android, Linux, macOS, and Windows. -
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SMILI
Scientific Visualisation Made Easy
The Simple Medical Imaging Library Interface (SMILI), pronounced 'smilie', is an open-source, light-weight and easy-to-use medical imaging viewer and library for all major operating systems. The main sMILX application features for viewing n-D images, vector images, DICOMs, anonymizing, shape analysis and models/surfaces with easy drag and drop functions. It also features a number of standard processing algorithms for smoothing, thresholding, masking etc. images and models, both with graphical user interfaces and/or via the command-line. See our YouTube channel for tutorial videos via the homepage. The applications are all built out of a uniform user-interface framework that provides a very high level (Qt) interface to powerful image processing and scientific visualisation algorithms from the Insight Toolkit (ITK) and Visualisation Toolkit (VTK). The framework allows one to build stand-alone medical imaging applications quickly and easily.
