GUI for building, simulating and optimizing kinetic models.
A 3D graphical interface for building, simulating and optimizing Markov kinetic models in response to user defined time dependent stimuli. Models can be represented as either states and connecting transitions or interacting allosteric elements (see http://dx.doi.org/10.1085/jgp.201411183). Model parameters can be optimized by fitting model responses to user data. Optional user defined constraint equations for model parameters are parsed with EigenLab...
iSBatch is a Java-based plugin for ImageJ (version 1.49d) or
its distribution Fiji. iSBatch is designed for quick evaluation
of analysis pipelines and visual exploration of datasets. It is
distributed under an open open-source license
(GNU General Public License, version 3). The plugin handles the data
in a hierarchical fashion based on a source folder
containing all data and little guidance provided by the user.
The software is designed for rapid exploration of large datasets
and...