Search Results for "cell"
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Showing 18 open source projects for "cell"
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awesome-single-cell
Community-curated list of software packages and data resources
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. List of software packages (and the people developing these methods) for single-cell data analysis, including RNA-seq, ATAC-seq, etc. Rapid, accurate and memory-frugal preprocessing of single-cell and single-nucleus RNA-seq data. Find bimodal, unimodal, and multimodal features in your data. Ascend is an R package comprised of fast, streamlined analysis functions optimized to address the statistical challenges of single cell RNA-seq. ... -
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CGAL
The Computational Geometry Algorithms Library
...These algorithms are useful in a wide range of applications, including computer aided design, robotics, molecular biology, medical imaging, geographic information systems and more. CGAL features a great range of data structures and algorithms, including Voronoi diagrams, cell complexes and polyhedra, triangulations, arrangements of curves, surface and volume mesh generation, spatial searching, alpha shapes, geometry processing, and many more. The use of these result in beautiful, visually complex and accurate representations. -
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Wflow.jl
Hydrological modeling
...Wflow is conceived as a framework, within which multiple distributed model concepts are available, which maximizes the use of open earth observation data, making it the hydrological model of choice for data-scarce environments. Based on gridded topography, soil, land use and climate data, wflow calculates all hydrological fluxes at any given grid cell in the model at a given time step. -
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RevoGrid
Powerful virtual data grid smartsheet with advanced customization
Support Millions of cells and thousands of columns easy and efficiently for fast data rendering. Easy to use. For large organizations managing massive datasets. Performance and scalability to handle even the most complex data tables. Rapid prototyping with intuitive and extendable codebase. Agility to build robust data-driven applications in no time. Quickly build elegant and efficient data grids. Lightweight yet powerful architecture lets you easily scale as your needs grow. -
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ipychart
The power of Chart.js with Python
...The charts created are fully configurable, interactive, and modular and are displayed directly in the output of the cells of your jupyter notebook environment. Charts are fully interactive, you can hover it to display tooltips and select the information you want to see directly from the output cell of your notebook. All the types of charts present in Chart.js are exposed in ipychart. Even complex features such as mixed-types charts are available. Charts are highly customizable and all Chart.js options are available in ipychart. You have complete control over the appearance of your chart. -
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nb-clean
Clean Jupyter notebooks of outputs, metadata, and empty cells
nb-clean cleans Jupyter notebooks of cell execution counts, metadata, outputs, and (optionally) empty cells, preparing them for committing to version control. It provides both a Git filter and pre-commit hook to automatically clean notebooks before they're staged, and can also be used with other version control systems, as a command line tool, and as a Python library. It can determine if a notebook is clean or not, which can be used as a check in your continuous integration pipelines. nb-clean can also be used as a pre-commit hook. ... -
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GDS3D
Interactive 3D Layout Viewer for GDSII
GDS3D is a cross-platform 3D hardware accelerated viewer for chip layouts. Read standalone GDS files or use the Cadence plugin for easy integration with your Virtuoso environment. Developed by PhDs of the IC-Design Group, University of Twente, The Netherlands The GDS3D project is also hosted on Github: https://github.com/icdut24/GDS3D, but currently not actively maintained by us. Forks can be found at https://github.com/trilomix/GDS3D and https://github.com/skuep/GDS3D -
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IPyPublish
Workflow for creating and editing publication ready scientific reports
A program for creating and editing publication-ready scientific reports and presentations, from one or more Jupyter Notebooks. Dynamically (and reproducibly) explore data, run code, and output the results. Dynamically edit and visualize the basic components of the document (text, math, figures, tables, references, citations, etc). Have precise control over what elements are output to the final document and how they are layed out and typeset. Also be able to output the same source document to... -
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React-Datasheet
Excel-like data grid (table) component for React
...This is implemented by using custom components to render the main table (including a custom header) and each row. The drag handler for the rows is the gray cell at the beginning of each row. The "Rating" column also shows how to specify custom cell editing and viewing components. -
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ComplexHeatmap
Make Complex Heatmaps
ComplexHeatmap is an R/Bioconductor package by Zuguang Gu et al. designed to create highly flexible, complex, richly annotated heatmaps and related visualizations. It allows arranging multiple heatmaps, adding annotations, combining heatmaps, customizing colors, layouts, and integrating other plots. Often used in genomics/bioinformatics to show expression, methylation, etc., with sidebars, annotations, clustering, etc. Highly customizable layout: combining different heatmaps, arranging and... -
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Excel2LaTeX
The Excel add-in for creating LaTeX tables
Making tables in LaTeX can be tedious, especially if some columns are calculated. This converter allows you to write a table in Excel instead, and export the current selection as LaTeX markup which can be pasted into an existing LaTeX document, or exported to a file and included via the \input command. Known to be compatible with Windows Excel 2000–2016 (32-bit and 64-bit) and Mac Excel 2004, 2011, and 2016. May also be compatible with other versions that support .xla add-ins. Does not work... -
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ngx-datatable
A feature-rich yet lightweight data-table crafted for Angular
...Left and Right Column Pinning. Row Detail View. Decoupled theme'ing with included Google Material theme. Light codebase / No external dependencies. AoT Compilation Support. Universal Support. Cell & Row Selection. -
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A Matlab based project for tracking cell nuclei in 3D space over time from live imaging data. (Sample images and lineage data are available under "Files".)
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This is the prototype version of software for robust detecting and segmentation of cell nuclei in 3D fluorescence labeled microscopy images. First release coming soon...
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15
hyperforms
Hyperforms is a visualisation tool for multi-dimensional objects and f
hyperforms is a visualisation tool for multi-dimensional objects and forms. They are projected into a 3D-Space by different methods of Projection. Currently a cell-first projection is implemented. Hyperforms aims at architectural experiments to create computer driven designs. --- The Project is in Research and not ready to use. --- -
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ncmerge
Merge multiple irregular NetCDF grids into an equirectangular grid.
ncmerge can combine cell-based irregular grids very quickly into a single equirectangular (Plate Carree) grid to simplify visualization workflows. It first creates a map file from coordinate grids, and then performs fast lookups when regridding data values. 3D time varying variables are supported. -
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GoFigure2 is an open-source, cross-platform application for visualizing, processing and analyzing of multidimensional microscopy data. Users can visualize, segment and track cells through time, detect cell-division and ultimately generate lineages.
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Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decision tree controlled by analytical statistics.
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