Open Source Mac Data Visualization Software - Page 42

Intrepid Bioinformatic's Integrative Genomics Viewer (IGV) modifications for viewing NGS files on IGV with data located on remote servers, accessed by web services.

Building blocks for invertible neural networks in the Julia programming language.

Inviwo is a modern, open-source visualization framework designed for interactive visual data analysis and scientific computing. Built in C++ with a modular, extensible architecture, Inviwo combines a visual editor (for creating data pipelines) with a powerful runtime engine that supports real-time rendering, interaction, and GPU-accelerated processing. It’s widely used in scientific domains for building and sharing visualizations of complex data such as medical imaging, simulations, and machine learning models. The platform supports both novice users through its graphical interface and advanced users through scripting and plugin development.

Common functional iterator patterns.

IterativeSolvers is a Julia package that provides iterative algorithms for solving linear systems, eigensystems, and singular value problems.

J3DVN is a framework which facilitates the creation of three dimensional data visualization using Java 3D. It works as a plug-in for Eclipse.

An extensible, real-time, 3D visualization, simulation, and game-design authoring tool. Integrates Java 3D and Eclipse RCP. Drag-&-Drop editing of a complex 3D scene graph. Fast world-building. Web delivery via Webstart or Applets.

This application is a tree algorithms visualizator. The user can create his own tree of a certain type (among binary, binary search, and red black), his algorithm and then can observe the execution in real time of his algorithm on his tree.

JBean3D project aims to develop JavaBeans components representing classes in Java3D.

JBotSim is a multipurpose dynamic network simulator that allows to quickly prototype a distributed algorithm and test its behavior on a set of static or mobile nodes. If mobile, the nodes can be controlled by the mouse or by program.

The JChemPaint Applet and Swing Application are Java programs for drawing 2D chemical structures like those found in most chemistry textbooks. It is based on the Chemistry Development Kit (cdk.sf.net). Downloads, tracker, and source code repository can be found on https://jchempaint.github.io

JDF is a DataFrames serialization format with the following goals, fast save and load times, compressed storage on disk, enabled disk-based data manipulation (not yet achieved), and support for machine learning workloads, e.g. mini-batch, sampling (not yet achieved). JDF stores a DataFrame in a folder with each column stored as a separate file. There is also a metadata.jls file that stores metadata about the original DataFrame. Collectively, the column files, the metadata file, and the folder is called a JDF "file". JDF.jl is a pure-Julia solution and there are a lot of ways to do nifty things like compression and encapsulating the underlying struture of the arrays that's hard to do in R and Python. E.g. Python's numpy arrays are C objects, but all the vector types used in JDF are Julia data types.

Data Explorer allows the user to load a CSV dataset, then query the dataset via standard SQL, then feed the resultant dataset into over 15 different visualizations.

Plotting of mathematical functions, including math expression evaluation

JFunctionViewer is a simple and fast OpenSource function plotter. Since it is written in Java it is Platform independend and can even be run from inside a Browser.

A library written in Java to manipulate GPX files. Also contained is a GUI program to visualize GPX files and the effects of manipulating them.

JGV is a Java applet that lets you embed movable 3D objects in web pages. Users can rotate, scale, translate, select and annotate the objects interactively. Also, JGV supports XML-based transmission of user events to the source web server over HTTP.

A set of utilities for working with the GAMESS Computational packages. Written in java to maximize cross platform use

JGraph is the most powerful, lightweight, feature-rich, and thoroughly documented open-source graph component available for Java. See the project homepage at www.jgraph.com for information and downloads.

JHeatChart is a simple Java library for generating heat map charts.

The enhanced Python fork of JILL, Julia Installer for Linux (and every other platform), Light.

JLD, for which files conventionally have the extension .jld, is a widely used format for data storage with the Julia programming language. JLD is a specific "dialect" of HDF5, a cross-platform, multi-language data storage format most frequently used for scientific data. By comparison with "plain" HDF5, JLD files automatically add attributes and naming conventions to preserve type information for each object. For lossless storage of arbitrary Julia objects, the only other complete solution appears to be Julia's serializer, which can be accessed via the serialize and deserialize commands. However, because the serializer is also used for inter-process communication, long-term backward compatibility is currently uncertain. (The JLDArchives repository exists to test the compatibility of older JLD file formats.) If you choose to save data using the serializer, please use the file extension .jls to distinguish the files from .jld files.

JLD2 saves and loads Julia data structures in a format comprising a subset of HDF5, without any dependency on the HDF5 C library. JLD2 is able to read most HDF5 files created by other HDF5 implementations supporting HDF5 File Format Specification Version 3.0 (i.e. libhdf5 1.10 or later) and similarly, those should be able to read the files that JLD2 produces. JLD2 provides read-only support for files created with the JLD package. The save and load functions, provided by FileIO, provide a mechanism to read and write data from a JLD2 file. To use these functions, you may either write using FileIO or using JLD2. FileIO will determine the correct package automatically.

Lattices and ordered sets visualization tool

JMAT : Java MATrix tools package. Provides an easy-to-use class of matrix with MATLAB-like functions and syntax. JMAT also includes plots and histograms in 2D or 3D, an expression parser, and some statistic simulation tools.