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JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
EdgeExpressDB (eeDB) is a federated data abstraction system designed for integrating, interpreting, and visualizing very large biology datasets. It is designed for scaling beyond Petabytes and 10^13 objects. http://fantom.gsc.riken.jp/4/edgeexpress
OWLViz4U (OWLViz for Unicode) is an extension of OWLViz for supporting Unicode based ontologies, which is an OWL visuliazation tool used with the Protege OWL plugin. OWLViz4U is part of the W3China OpenSource Project (http://www.w3china.org).
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Group Explorer is mathematical visualization software for the abstract algebra classroom.
Users can explore dozens of finite groups (and morphisms among them) visually and interactively.
ProgPorts is an administrative and easy user interface to hundreds of proteomics, molecular dynamics, and protein crystallography programs. It is a hybrid of the prog/setup system, developed at Johns Hopkins University, and GNU-Darwin ports system.
A collection of applets used to demonstrate physics and math principles. The applets include: a ray diagram drawing applet, a collision of disks applet, an electromagnetic field mapper and a 3d hydrogen orbital simulation.
PyGTS is a python package used to construct, manipulate, and perform computations on triangulated surfaces. It is a hand-crafted and pythonic binding for the GNU Triangulated Surface (GTS) Library. THIS PROJECT IS NOT BEING MAINTAINED.
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ClutrFree allows the visualization and interpretation of gene expression data clusters for multiple clustering experiments. Data is integrated with ontological annotations (GO), and enrichement of annotations (hypergeometric distribution) is computed.
An application designed to display series of images with a special focus on display quality and extremely precise display timing. The project provides a tool for use in scientific experiments involving display of visual stimuli.
Angela is a Mandelbrot Set explorer written in Java with Multi-Agent programming paradigm. Supports multithreading, logic core number detection, interesting point saving/loading, color editing and image saving.
cross platform CAD software with similar user experience as autocad (R)
for a video that shows it is on the right path copy & paste the following link
http://www.youtube.com/watch?v=N6IT8AH4HV8
please it really needs contribution
equal III is an equation visualization tool. It's possible to graph f(x,y) = 0. So it is able to graph systems of equations and inequations, and do graphic change analysis.
FCOLLADA based COLLADA plugins for Maya and 3DSMax. Newer plugins with 1.5 support and support the files mentioned in "Papervision3D Essentials" by Paul Tondeur are available at http://opencollada.org . Please use this project for FCOLLADA related topi
Vendetta is used to manage and visualize distributed network testbeds. The monitor application visualizes network events in 3D. Vendetta also simplifies common testbed tasks such as pushing code to nodes, initiating experiments, and retreiving logfiles.
WebBabel is a python web application using OpenBabel to convert files
from one format to another.
It runs under Windows, Mac or Linux on your desktop, workstation or laptop.
It uses the Jmol (or Marvin) viewer to show the structures being converted.
Garmon (Gnome/GTK+ Car Monitor) is a tool that lets you connect to an OBD-II compliant vehicle using an ELM327 based scanning device. It supports monitoring live and freeze frame data as well as reading and clearing DTCs. It is written in python.
PGAF provides a framework tuned, user-specific genetic algorithms by handling I/O, UI, and parallelism. It is designed for optimizing functions that take a "very long time" to evaluate.