Search Results for "bcftools-windows" - Page 6
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Molly.jl
Molecular simulation in Julia
Much of science can be explained by the movement and interaction of molecules. Molecular dynamics (MD) is a computational technique used to explore these phenomena, from noble gases to biological macromolecules. Molly.jl is a pure Julia package for MD, and for the simulation of physical systems more broadly. The package is described in a talk at Enzyme Conference 2023 and an earlier talk at the JuliaMolSim minisymposium at JuliaCon 2022. Slides are also available for a tutorial in September... -
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Roots.jl
Root finding functions for Julia
This package contains simple routines for finding roots, or zeros, of scalar functions of a single real variable using floating-point math. The find_zero function provides the primary interface. The basic call is find_zero(f, x0, [M], [p]; kws...) where, typically, f is a function, x0 a starting point or bracketing interval, M is used to adjust the default algorithms used, and p can be used to pass in parameters. Bisection-like algorithms. For functions where a bracketing interval is known... -
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geemap
A Python package for interactive geospaital analysis and visualization
A Python package for interactive geospatial analysis and visualization with Google Earth Engine. Geemap is a Python package for geospatial analysis and visualization with Google Earth Engine (GEE), which is a cloud computing platform with a multi-petabyte catalog of satellite imagery and geospatial datasets. During the past few years, GEE has become very popular in the geospatial community and it has empowered numerous environmental applications at local, regional, and global scales. GEE... -
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FEniCS.jl
A scientific machine learning (SciML) wrapper for the FEniCS
FEniCS.jl is a wrapper for the FEniCS library for finite element discretizations of PDEs. This wrapper includes three parts. Installation and direct access to FEniCS via a Conda installation. Alternatively one may use their current FEniCS installation. A low-level development API and provides some functionality to make directly dealing with the library a little bit easier, but still requires knowledge of FEniCS itself. Interfaces have been provided for the main functions and their... -
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JLD2
HDF5-compatible file format in pure Julia
JLD2 saves and loads Julia data structures in a format comprising a subset of HDF5, without any dependency on the HDF5 C library. JLD2 is able to read most HDF5 files created by other HDF5 implementations supporting HDF5 File Format Specification Version 3.0 (i.e. libhdf5 1.10 or later) and similarly, those should be able to read the files that JLD2 produces. JLD2 provides read-only support for files created with the JLD package. The save and load functions, provided by FileIO, provide a... -
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Nemo.jl
Julia bindings for various mathematical libraries (including flint2)
Nemo is a computer algebra package for the Julia programming language. It aims to cover commutative algebra, number theory and group theory. Julia bindings for various mathematical libraries (including flint2) -
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MAT.jl
Julia module for reading MATLAB files
Julia module for reading MATLAB files. Read and write MATLAB files in Julia. This library can read MATLAB .mat files, both in the older v4/v5/v6/v7 format, as well as the newer v7.3 format. -
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Plots
Powerful convenience for Julia visualizations and data analysis
Data visualization has a complicated history. Plotting software makes trade-offs between features and simplicity, speed and beauty, and a static and dynamic interface. Some packages make a display and never change it, while others make updates in real-time. Plots is a visualization interface and toolset. It sits above other backends, like GR, PythonPlot, PGFPlotsX, or Plotly, connecting commands with implementation. If one backend does not support your desired features or make the right... -
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ReTest.jl
Testing framework for Julia
ReTest is a testing framework for Julia allowing defining tests in source files, whose execution is deferred and triggered on demand. This is useful when one likes to have definitions of methods and corresponding tests close to each other. This is also useful for code that is not (yet) organized as a package, and where one doesn't want to maintain a separate set of files for tests. Filtering run testsets with a Regex, which is matched against the descriptions of testsets. This is useful for... -
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StatProfilerHTML.jl
Show Julia profiling data in an explorable HTML page
This module formats the output from Julia's Profile module into an html rendering of the source function lines and functions, allowing for interactive exploration of any bottlenecks that may exist in your code. -
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CUDA.jl
CUDA programming in Julia
High-performance GPU programming in a high-level language. JuliaGPU is a GitHub organization created to unify the many packages for programming GPUs in Julia. With its high-level syntax and flexible compiler, Julia is well-positioned to productively program hardware accelerators like GPUs without sacrificing performance. The latest development version of CUDA.jl requires Julia 1.8 or higher. If you are using an older version of Julia, you need to use a previous version of CUDA.jl. This will... -
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BetaML.jl
Beta Machine Learning Toolkit
The Beta Machine Learning Toolkit is a package including many algorithms and utilities to implement machine learning workflows in Julia, Python, R and any other language with a Julia binding. All models are implemented entirely in Julia and are hosted in the repository itself (i.e. they are not wrapper to third-party models). If your favorite option or model is missing, you can try to implement it yourself and open a pull request to share it (see the section Contribute below) or request its... -
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LinearSolve.jl
High-Performance Unified Interface for Linear Solvers in Julia
LinearSolve.jl is a unified interface for the linear solving packages of Julia. It interfaces with other packages of the Julia ecosystem to make it easy to test alternative solver packages and pass small types to control algorithm swapping. It also interfaces with the ModelingToolkit.jl world of symbolic modeling to allow for automatically generating high-performance code. Performance is key: the current methods are made to be highly performant on scalar and statically sized small problems,... -
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Superset
Apache Superset is a data visualization and data exploration platform
Apache Superset is a modern data exploration and visualization platform. Superset is fast, lightweight, intuitive, and loaded with options that make it easy for users of all skill sets to explore and visualize their data, from simple line charts to highly detailed geospatial charts. Quickly and easily integrate and explore your data, using either our simple no-code viz builder or state-of-the-art SQL IDE. Superset can connect to any SQL-based data source through SQLAlchemy, including modern... -
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KernelAbstractions.jl
Heterogeneous programming in Julia
KernelAbstractions (KA) is a package that enables you to write GPU-like kernels targetting different execution backends. KA is intended to be a minimal and performant library that explores ways to write heterogeneous code. -
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Graphs.jl
An optimized graphs package for the Julia programming language
The goal of Graphs.jl is to offer a performant platform for network and graph analysis in Julia, following the example of libraries such as NetworkX in Python. Offers a set of simple, concrete graph implementations – SimpleGraph (for undirected graphs) and SimpleDiGraph (for directed graphs), an API for the development of more sophisticated graph implementations under the AbstractGraph type, and a large collection of graph algorithms with the same requirements as this API. -
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GoldenCheetah
Performance Software for Cyclists, Runners, Triathletes and Coaches
Analyze using summary metrics like BikeStress, TRIMP, or RPE. Extract insight via models like Critical Power and W'bal. Track and predict performance using models like Banister and PMC. Optimize aerodynamics using Virtual Elevation. Train indoors with ANT and BTLE trainers. Upload and Download with many cloud services including Strava, Withings, and Today's Plan. Import and export data to and from a wide range of bike computers and file formats. Track body measures, and equipment use and set... -
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CausalInference.jl
Causal inference, graphical models and structure learning in Julia
Julia package for causal inference and analysis, graphical models and structure learning. This package contains code for the PC algorithm and the extended FCI algorithm, the score based greedy equivalence search (GES) algorithm, the Bayesian Causal Zig-Zag sampler and a function suite for adjustment set search. -
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Oxygen.jl
A breath of fresh air for programming web apps in Julia
A breath of fresh air for programming web apps in Julia. Oxygen is a micro-framework built on top of the HTTP.jl library. Breathe easy knowing you can quickly spin up a web server with abstractions you're already familiar with. -
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DSP.jl
Filter design, periodograms, window functions
DSP.jl provides a number of common digital signal processing routines in Julia. -
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ImageFiltering.jl
Julia implementations of multidimensional array convolution
Julia implementations of multidimensional array convolution and nonlinear stencil operations. ImageFiltering implements blurring, sharpening, gradient computation, and other linear filtering operations, as well nonlinear filters like min/max. -
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KernelDensity.jl
Kernel density estimators for Julia
Kernel density estimators for Julia. -
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ConcurrentSim.jl
Discrete event process oriented simulation framework written in Julia
A discrete event process-oriented simulation framework written in Julia inspired by the Python library SimPy. One of the longest-lived Julia packages (originally under the name SimJulia). -
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Latexify.jl
Convert julia objects to LaTeX equations, arrays or other environments
This is a package for generating LaTeX maths from Julia objects. This package utilizes Julia's homoiconicity to convert expressions to LaTeX-formatted strings. Latexify.jl supplies functionalities for converting a range of different Julia objects. -
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CondaPkg.jl
Add Conda dependencies to your Julia project
Add Conda dependencies to your Julia project. This package is a lot like Pkg from the Julia standard library, except that it is for managing Conda packages. Conda dependencies are defined in CondaPkg.toml, which is analogous to Project.toml. CondaPkg will install these dependencies into a Conda environment specific to the current Julia project. Hence dependencies are isolated from other projects or environments. Functions like add, rm, status exist to edit the dependencies programmatically....
