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A Matlab based project for tracking cell nuclei in 3D space over time from live imaging data.
(Sample images and lineage data are available under "Files".)
TkTable is a full-featured 2D table widget for Tk. It supports images, embedded windows, varying colors and fonts, and more. Also here is Vu, a Tk widget extension that includes a pie, dial, spinbox and more, and Tile, a themed widget set for Tk.
Lloyd's Algorithm-based Volumetric Analysis for AFM Images
...Work is in progress to provide three-channel functionality, allowing comparison of relative intensity of red, green, and blue channels in multi-color images.
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Malimpa stands for MAtlab Library for IMage Processing and Analysis. It provides functions for 2D/3D grascale/color image creation, filtering, or measurement. It requires, and complements Matlab Image Processing Toolbox.
Important notice: the project is now hosted in GitHub, https://github.com/dlegland/matImage
This is the prototype version of software for robust detecting and segmentation of cell nuclei in 3D fluorescence labeled microscopy images. First release coming soon...
The flNeuronTool allows users to reconstruct and proofread neuronal morphologies in light microscopy images. The system incorporates automatic tracing and manual editing of neuron reconstruction into a cooperative 3D interactive visualization-assisted environment, which is a powerful tool for analysis of complex neuronal images.
This plugin allow to visualize several e.g. gene expression values simultanously using pie charts. * Please cite http://www.biomedcentral.com/1752-0509/4/164 *
Version of SerialGLCD, to be used with 160x128 Sparkfun Display
...This function has been modified, in order to support this Display. It is easy to modify it to support both displays (160x128 and 128x64).
Draw_BMP_Progmem() is intended to display images stored in flash memory. It reads the image from flash memory, and then it use Draw_BMP_Ram() function to do it.
I have included a full example of using, at the end of main file.
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A simple Java application to view the Mandelbrot set at almost any zoom and resolution and save images of it to a file.
Features:
-high precision for deep zooms
-background threads to prevent GUI freezing
-adjustable color scheme
-easy point-and-zoom fractal browsing
Human Machine integration for vessel segmentation has as main objective finding precise methods for the segmentation of blood vessels in retinal images, with the main goal of improving screening and diagnosis procedures.
The goal of project is delivering useful and simple tools to creating charts. Functionality is provided by modules/plugins (OSGi technology). It allows you to create your plugins or customize Analysis application (by changing installed plugins in application). The Application, thanks to JAVA technology, is portable on the most operating system.
In Files page you can find the application and also patches to its.
RayLab is a simple, portable ray tracer for producing 3D images. It uses a custom text-based scene description language, and supports several mathematical shapes, as well as CSG operations (constructive solid geometry).
PIAF (Prototype Image Applications Fast) is a prototyping tool for helping development of image processing algorithms. Based on a Qt GUI, it can display and process several live video inputs or still images with a plugins based architecture.
Quantum Mechanical Toolkit And 3D Viewer for C++. Allows Data Visualisation via Images, Surfaces and Volume plots using OpenGL, as well as rapid development Quantum Mechanical Simulations. Uses the Blitz++, VTK Visualisation and Qt Libraries.
jQuantum is a Java program to simulate a quantum computer, to design quantum circuits, and to visualize the execution of quantum algorithms. Another main purpose, however, is to create images in your head, and thereby - understanding.
VIPS is an image processing suite designed for extremely large images and colorimetry. It consists of a powerful re-usable library and a graphical user interface. http://www.vips.ecs.soton.ac.uk
VisualSense was developed to serve as an analysis tool for textual and numerical data extracted from image analysis of artwork from different cultures and influences. It can be used for any kind of data respecting the format (specified in the README)
Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decision tree controlled by analytical statistics.
Construct and management virtual clusters which the nodes of the clusters running on the virtual machine rather than native machine. Fast install and switch virtual clusters. Efficiently storage vm images. support variant VMMs.
GUIH (Graphics User Interface in Header files) is a simple, light-weight,
and cross-platform visualization library for images and 2D/3D OpenGL graphics,
implemented entirely in C++ header files.
GeoGlyph is an application that can be used to create contours from stereo pair images or anaglyph images. The software can export points to a number of different formats. GeoGlyph strives to be as easy to use.
Actionscript 3 classes currently for easily loading images, movies, with panning, slideshow and other effects. Includes a useful logging class. Also AS2 code for financial charts, pie charts, node graphs, etc. Also AS2/JS classes for stats/data handling.
PyTioga is for creating figures and plots with high quality text and graphics in PDF format. Text is processed directly by TeX (not an emulation), and the graphics covers a broad range of PDF features including images, curves, clipping, and transparency.
An application designed to display series of images with a special focus on display quality and extremely precise display timing. The project provides a tool for use in scientific experiments involving display of visual stimuli.