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A collection of applets used to demonstrate physics and math principles. The applets include: a ray diagram drawing applet, a collision of disks applet, an electromagnetic field mapper and a 3d hydrogen orbital simulation.
ClutrFree allows the visualization and interpretation of gene expression data clusters for multiple clustering experiments. Data is integrated with ontological annotations (GO), and enrichement of annotations (hypergeometric distribution) is computed.
Group Explorer is mathematical visualization software for the abstract algebra classroom.
Users can explore dozens of finite groups (and morphisms among them) visually and interactively.
JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
ProgPorts is an administrative and easy user interface to hundreds of proteomics, molecular dynamics, and protein crystallography programs. It is a hybrid of the prog/setup system, developed at Johns Hopkins University, and GNU-Darwin ports system.
An application designed to display series of images with a special focus on display quality and extremely precise display timing. The project provides a tool for use in scientific experiments involving display of visual stimuli.
equal III is an equation visualization tool. It's possible to graph f(x,y) = 0. So it is able to graph systems of equations and inequations, and do graphic change analysis.
Vendetta is used to manage and visualize distributed network testbeds. The monitor application visualizes network events in 3D. Vendetta also simplifies common testbed tasks such as pushing code to nodes, initiating experiments, and retreiving logfiles.
WebBabel is a python web application using OpenBabel to convert files
from one format to another.
It runs under Windows, Mac or Linux on your desktop, workstation or laptop.
It uses the Jmol (or Marvin) viewer to show the structures being converted.
PGAF provides a framework tuned, user-specific genetic algorithms by handling I/O, UI, and parallelism. It is designed for optimizing functions that take a "very long time" to evaluate.
A generic geospatial analysis and viewing capability using Perl scripts that provides the foundation and structure for readily creating KML data files from disparate data sources. KML files can be read and viewed by Google Earth and other tools.
MBDyn_sim_suite is a collection of free pre&post-processing tools and simulation models for the open-source multi-body analysis software MBDyn forming a general purpose simulation environment for structural dynamics with an emphasis on wind turbines.
APTo is a free and open-source tool to view, explore and analyse 3D Atom Probe data. You can start by simply opening a *.pos file with the corresponding *.rng file.
The Optics Project on the Web (WebTOP) is a 3D, interactive computer graphics system that visualizes optical phenomena. Its purpose is to help instructors teach and students learn about optics. It is a platform independent Java application that uses X3D.
This library provides an easy interface to Gnuplot (http://www.gnuplot.info/) from OCaml (http://caml.inria.fr/) for static 2D and 3D graphs and simple animations. This library aims to be portable on all platforms OCaml runs on.
Corikon is a simple software to visualise the correlation matrix of a set of data, using the iconography of correlations.The first step of the project has been reached: rendering the distribution of data according to the user wills.
Clothes - sewing CAD for creation of models of clothes.
Based on the new concept of the automated designing of clothes with use of parametrical model. Creates a base design of model of clothes and allows to change it depending on necessity of updating.
The Olduvai bioinformatics visualization system allows side by side comparison of:
TreeJuxtaposer: evolutionary trees
SequenceJuxtaposer: genomic sequences