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GParticles is a tool to simulate the growth behaviour of two- and three-dimensional nano particles based on a simple grid model, with adjustable (time-dependent) concentrations of the particle's different components.
Orthogonal (a.k.a manhattan) line routing is
a technique for rendering a human-readable
hierarchical diagram. Manhattanlines
implements an orthogonal line routing algorithm
that minimizes line length and crossings.
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ProteinShader is a molecular visualization tool that can produce illustrative renderings of proteins that approximate what an artist might create using pen and ink. This free platform-independent program is written in Java and OpenGL Shading Language.
Developed in Java programming language, this software lets its users view and manipulate hierarchical data structures represented as a hyperbolic trees.
CallMesh is an eclipse plugin visualizing call graphs in java projects with the help of the zest toolkit. It allows easy navigation around you classes. Additionally, call graphs can be exported as dot-files as understood by graphvis.
MathMLWYSIWYGEditor allows users to generate mathematical, physical and engineering formulas using the mathematical markup language, MathML. Requires hardly any knowledge on MathML.
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glomp is an open source multipipe OpenGL library. Its intent is to automatically distribute 3D graphics computations over multiple graphics card on the same machine.
BINViz(Bidirectional Interactive Network Visualization) is a JavaScript library for network and graph visualization. The goal of this tool is to provide a better way to visualize complex graphical models and the underlying data in a web-based environ
StormForce is a free open source program written in Python/PyGame for the Boltek LD-250/StormTracker. StormForce works in FreeBSD, Linux, and Microsoft Windows.
This package allows you to create virtual rubik cubes and move their faces. Moreover you can see at every time the current position of the cube and find its solution. Visit http://www.hcroboting.com for more information
DiscriAlign implements a novel algorithm that aligns a set of biological interaction networks.It identifies both functionally conserved and dissimilar regions.
Draw 2D: function chart, data points chart, statistical bar chart. It's possible to combine all 3 types of chart into one. This is powerfull and easy tool, as it gives ability to manage many charts parameters. This may often compete with Gnuplot and oth
The Parallel Compositing library enables developers to write scalable 3D graphics applications. The library does sort-last compositing, and works on both clusters and SMP machines. The API aims to be the MPI of parallel compositing.
The SESAME (Simulation of Embedded System Architectures for Multilevel Exploration) software system is an embedded system co-simulation environment and research tool which implements the ideas of the SESAME project at the University of Amsterdam.
4-Dimensional Cell Simulator (4DiCeS) is a framework on hybrid (stochastic and deterministic) modeling and simulation of (whole) cell environments in 4D. The framework may incorporate any reaction and diffusion algorithms applicable in a 4D grid layout.
The Real-time Network Grapher (RtNG) is a Java applet. RtNG plots a scrolling line-graph from a continuous feed of CSV-style data, where new data arrives periodically with a period 0.1s or greater. The data feed can be either a TCP port or a URL
GrALoG is a tool for editing and visualising graph-like-structures and the results of algorithms running on them. Through it's plugins GrALoG is hugely extendable, i.e. plugin-developers can define their own graph-like structures and algorithms.