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FileTrees.jl
Parallel file processing made easy
Easy everyday parallelism with a file tree abstraction. Read a directory structure as a Julia data structure, (lazy-)load the files, apply map and reduce operations on the data while not exceeding available memory if possible. Make up a file tree in memory, create some data to go with each file (in parallel), write the tree to disk (in parallel). FileTrees is a set of tools to lazy-load, process and save file trees. Built-in parallelism allows you to max out all threads and processes that... -
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FEniCS.jl
A scientific machine learning (SciML) wrapper for the FEniCS
FEniCS.jl is a wrapper for the FEniCS library for finite element discretizations of PDEs. This wrapper includes three parts. Installation and direct access to FEniCS via a Conda installation. Alternatively one may use their current FEniCS installation. A low-level development API and provides some functionality to make directly dealing with the library a little bit easier, but still requires knowledge of FEniCS itself. Interfaces have been provided for the main functions and their... -
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Catalyst.jl
Chemical reaction network and systems biology interface
Catalyst.jl is a symbolic modeling package for analysis and high-performance simulation of chemical reaction networks. Catalyst defines symbolic ReactionSystems, which can be created programmatically or easily specified using Catalyst's domain-specific language (DSL). Leveraging ModelingToolkit and Symbolics.jl, Catalyst enables large-scale simulations through auto-vectorization and parallelism. Symbolic ReactionSystems can be used to generate ModelingToolkit-based models, allowing the easy... -
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Broot
A new way to see and navigate directory trees
Get an overview of a directory, even a big one. That's what makes it usable where the old tree command would produce pages of output. Hit alt/enter and you're back to the terminal in the desired location. This way, you can navigate to a directory with the minimum amount of keystrokes, even if you don't exactly remember where it is. Broot is fast and doesn't block (any keystroke interrupts the current search to start the next one). Never lose track of file hierarchy while you search. Broot... -
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Sysdig
Linux system exploration and troubleshooting tool
Continuously assess cloud security posture by flagging misconfigurations and suspicious activity. Consolidate container and host scanning in a single workflow. Automate scanning locally in your CI/CD tools without images leaving your environment and block vulnerabilities pre-deployment. Visualize all network communication across apps and services. Apply microsegmentation by automating Kubernetes-native network policies. Unify threat detection and incident response across containers,... -
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Chokidar
Minimal and efficient cross-platform file watching library
Chokidar is a solution for all the users of Node.js fs.watch who are tired of it not reporting filenames on MacOS and events at all when using editors like Sublime on MacOS. Node.js fs.watch often reports events twice, emits most changes as rename, and it does not provide an easy way to recursively watch file trees nor supports recursive watching on Linux. Same as with Node.js fs.watchFile. Therefore, Chokidar resolves these problems. Initially made for Brunch (an ultra-swift web app build... -
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visx
Visualization components
visx a collection of expressive, low-level visualization primitives for React. At Airbnb, we made it a goal to unify our visualization stack across the company and in the process, we created a new project that brings together the power of D3 with the joy of React. visx is split into multiple packages. Start small and use only what you need. Bring your own state management, animation library, or CSS-in-JS solution. Odds are good your React app already has an opinion on how animation, theming,... -
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Pkg Julia
Package manager for the Julia programming language
Unlike traditional package managers, which install and manage a single global set of packages, Pkg is designed around “environments”: independent sets of packages that can be local to an individual project or shared and selected by name. The exact set of packages and versions in an environment is captured in a manifest file which can be checked into a project repository and tracked in version control, significantly improving reproducibility of projects. If you’ve ever tried to run code you... -
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awesome-single-cell
Community-curated list of software packages and data resources
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. List of software packages (and the people developing these methods) for single-cell data analysis, including RNA-seq, ATAC-seq, etc. Rapid, accurate and memory-frugal preprocessing of single-cell and single-nucleus RNA-seq data. Find bimodal, unimodal, and multimodal features in your data. Ascend is an R package comprised of fast, streamlined analysis functions optimized to... -
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Delta
A viewer for git and diff output
Code evolves, and we all spend time studying diffs. Delta aims to make this both efficient and enjoyable: it allows you to make extensive changes to the layout and styling of diffs, as well as allowing you to stay arbitrarily close to the default git/diff output. Language syntax highlighting with color themes. Within-line highlights based on a Levenshtein edit inference algorithm. Git style strings (foreground color, background color, font attributes) are supported for >20 stylable elements.... -
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ReTest.jl
Testing framework for Julia
ReTest is a testing framework for Julia allowing defining tests in source files, whose execution is deferred and triggered on demand. This is useful when one likes to have definitions of methods and corresponding tests close to each other. This is also useful for code that is not (yet) organized as a package, and where one doesn't want to maintain a separate set of files for tests. Filtering run testsets with a Regex, which is matched against the descriptions of testsets. -
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VisPy
Main repository for Vispy
Vispy is an open-source, high-performance interactive visualization library in Python, designed for creating scientific visualizations and interactive plots. It leverages the power of modern Graphics Processing Units (GPUs) through OpenGL to render large datasets efficiently. Vispy supports a wide range of visualization types, including 2D plots, 3D visualizations, volume rendering, and more, making it suitable for scientific research, data analysis, and educational purposes. -
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The NLopt module for Julia
Package to call the NLopt nonlinear-optimization library from Julia
This module provides a Julia-language interface to the free/open-source NLopt library for nonlinear optimization. NLopt provides a common interface for many different optimization algorithms. -
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MPI.jl
MPI wrappers for Julia
...The syntax should look familiar if you know MPI already, but some arguments may not be needed (e.g. the type or the number of elements of arrays, which are inferred automatically), others may be placed slightly differently, and others may be optional keyword arguments (e.g. for the index of the root process, or the source and destination of point-to-point communication functions). -
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Rotations.jl
Julia implementations for different rotation parameterizations
3D rotations made easy in Julia. This package implements various 3D rotation parameterizations and defines conversions between them. At their heart, each rotation parameterization is a 3×3 unitary (orthogonal) matrix (based on the StaticArrays.jl package), and acts to rotate a 3-vector about the origin through matrix-vector multiplication. While the RotMatrix type is a dense representation of a 3×3 matrix, we also have sparse (or computed, rather) representations such as quaternions,... -
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GeoServer is an open source software server written in Java that allows users to share and edit geospatial data. Designed for interoperability, it publishes data from any major spatial data source using open standards: WMS, WFS, WCS, WPS and REST
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ArgParse.jl
Package for parsing command-line arguments to Julia programs
ArgParse.jl is a package for parsing command-line arguments to Julia programs. -
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Maxima -- GPL CAS based on DOE-MACSYMA
Computer Algebra System written in Common Lisp
...It features its own programming language, and many users have contributed useful packages in various areas over the decades. It is GPL-licensed and largely written in Common Lisp. Executables can be downloaded for Windows, Mac, Linux, and Android; source code is also available. An active community maintains and extends the system. Website: https://maxima.sourceforge.io Additional add-on packages for Maxima can be found at: https://github.com/maxima-project-on-github/maxima-packages -
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FreeMind
A premier mind-mapping software written in Java
A mind mapper, and at the same time an easy-to-operate hierarchical editor with strong emphasis on folding. These two are not really two different things, just two different descriptions of a single application. Often used for knowledge and content management. -
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Tokenize.jl
Tokenization for Julia source code
Tokenize is a Julia package that serves a similar purpose and API as the tokenize module in Python but for Julia. This is to take a string or buffer containing Julia code, perform lexical analysis and return a stream of tokens. -
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GMAT
General Mission Analysis Tool
The General Mission Analysis Tool (GMAT) is an open-source tool for space mission design and navigation. GMAT is developed by a team of NASA, private industry, and public and private contributors. The GMAT development team is pleased to announce the release of GMAT version R2026a. For a complete list of new features, compatibility changes, and bug fixes, see the R2026a Release Notes in the Users Guide. -
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Avogadro
An intuitive molecular editor and visualization tool
Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science and related areas. It offers a flexible rendering framework and a powerful plugin architecture. -
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GeoTools, the Java GIS toolkit
Toolkit for working with and mapping geospatial data
GeoTools is an open source (LGPL) Java code library which provides standards compliant methods for the manipulation of geospatial data. GeoTools is an Open Source Geospatial Foundation project. The GeoTools library data structures are based on Open Geospatial Consortium (OGC) specifications. -
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Jmol
An interactive viewer for three-dimensional chemical structures.
Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other... -
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HEALPix
Data Analysis, Simulations and Visualization on the Sphere
Software for pixelization, hierarchical indexation, synthesis, analysis, and visualization of data on the sphere. Please acknowledge HEALPix by quoting the web page http://healpix.sourceforge.net (or https://healpix.sourceforge.io) and publication: K.M. Gorski et al., 2005, Ap.J., 622, p.759 Full software documentation available at https://healpix.sourceforge.io/documentation.php Wiki Pages: https://sourceforge.net/p/healpix/wiki/Home Exchanging Data with HEALPix (in FITS files):...