Showing 412 open source projects for "using"

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  • AI-generated apps that pass security review Icon
    AI-generated apps that pass security review

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  • 1
    TinkerCell is a software for synthetic biology. The visual interface allows users to design networks using various biological "parts". Models can include modules and multiple cells. Users can program new functions using C or Python. www.tinkercell.
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    Downloads: 23 This Week
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  • 2
    DSAquire

    DSAquire

    Data aquasition software for Thurlby DSA524

    DSAquire allows you to download and plot trace data from a Thurlby DSA524 digital storage adaptor (it's a 25 year old instrument, but better late than never, eh?). The data is downloaded via an RS232 serial link using a null modem cable. You can export the plot as an image or export the data in real-world units as a csv file. This software runs under Linux and also under Windows XP and later using Cygwin. Pre-compiled binaries are supplied, as are full sources under the GPL. The interface of provided via FLTK. Also hosted here are the service and operators' manuals for this instrument, as well as dumps of the firmware from the EPROM. ...
    Downloads: 0 This Week
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  • 3
    GWT Highcharts
    GWT Highcharts is a freely available open source library that provides an elegant and feature complete approach for including Highcharts and Highstock visualizations within a GWT application using pure Java code. Note: the source code for this project is now being maintained on GitHub here: https://github.com/squinn/gwt-highcharts
    Downloads: 7 This Week
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  • 4
    scipion-xmipp

    scipion-xmipp

    Image processing framework to integrate EM software packages.

    Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing.
    Downloads: 0 This Week
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  • Atera all-in-one platform IT management software with AI agents Icon
    Atera all-in-one platform IT management software with AI agents

    Ideal for internal IT departments or managed service providers (MSPs)

    Atera’s AI agents don’t just assist, they act. From detection to resolution, they handle incidents and requests instantly, taking your IT management from automated to autonomous.
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  • 5
    gMol

    gMol

    gMol molecular graphics

    We've moved to https://github.com/tjod/gMol/wiki gMol is an interactive visualization system used to display and manipulate 3-dimensional models of scientific data, such as molecular structures and surfaces. It contains both OpenGL and web browser widgets that enable flexible user interfaces.
    Downloads: 0 This Week
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  • 6

    KMeansAniX

    Animation of kmeans clustering using X Window System

    Open source animation of kmeans clustering in X Window System using the C++ libplotter library. Supports Linux, Mac, and BSD. Includes common initialization methods such as Forgy, Macqueen, random, and angular. Sample videos are available through the Files Tab above. The SVN repo is accessible thorugh the Code Tab above. Requires a C++ compiler, libplot-dev, and libncurses5-dev Mac alternative to libplot-dev: macports plotutils +x11
    Downloads: 0 This Week
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  • 7

    HomSI

    Homozygous Stretch Identifier from next-generation sequencing data

    ...Recently, the advent of next generation sequencing enables the concurrent identification of homozygous regions and the detection of mutations relevant for diagnosis, using data from a single sequencing experiment. In this respect, we have developed a novel tool that identifies homozygous regions using deep sequence data. Using *.vcf files as an input file, our program identifies the majo
    Downloads: 0 This Week
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  • 8
    Fractal Zoom Explorer

    Fractal Zoom Explorer

    Fractal Zoom Explorer

    Fractal Explorer supporting FTF and common .NET standard supported formats
    Downloads: 8 This Week
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  • 9

    LogisticBell

    Here we test the Logistic Map using finite and infinite precision...

    Here we test the Logistic Map using finite and infinite precision floats (Apfloats). More decimals produce longer sequence (longer chaotic signal for certain parameters). Shorter decimal precision makes the sequence converge to zero eventually. In the process, number of decimals rises and then drops for some reason, forming a bell-shaped curve with long tail. On second consideration, this does not look like a bell-shaped curve at all.
    Downloads: 0 This Week
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  • Grafana: The open and composable observability platform Icon
    Grafana: The open and composable observability platform

    Faster answers, predictable costs, and no lock-in built by the team helping to make observability accessible to anyone.

    Grafana is the open source analytics & monitoring solution for every database.
    Learn More
  • 10
    Debrief is an Open Source Java application used for viewing maritime vessel tracks in 2 and 3 dimensions. Tracks are read in using a number of flat-file ASCII formats, including AUTEC (RAO), PMRF and AFWTF.
    Downloads: 0 This Week
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  • 11

    TeachingDemos

    Bioinformatics related demos and tutorials using the R programming lan

    Bioinformatics related demos and tutorials using the R programming language for large biological data. Licence: Creative Commons Attribution-NonCommercial 4.0 International License
    Downloads: 3 This Week
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  • 12
    NanoCap

    NanoCap

    Carbon Fullerene and Capped Nanotube Generator

    NanoCap is a generic application for the construction of low energy fullerene and capped nanotube structures. It provides an ideal tool to accompany the study of finite carbon molecules using computer simulation. The implementation involves a standalone application which includes a GUI and allows for dynamic visual inspection through 3D rendering. In addition, the NanoCap core libraries can be used in custom Python scripts that enabled the user to produce structures in bulk or to include the structure generation routines into pre-existing code.
    Downloads: 0 This Week
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  • 13
    The API library call CI5010RS422.DLL

    The API library call CI5010RS422.DLL

    This library designed for use with weighing terminal CI-5010A

    This library, then DLL, designed for use with weighing terminal CI-5010A on the RS-422/485 or RS-232 via a physical or virtual COM port over USB in OS NT/2000/2003/XP/Vista/7/8 and reads and decodes the data of the operation, gross weight, net weight, unit number, value and sign weight, units and features indicators. Restoring communications using virtual serial port automatically. ORDER use and limitations: 1. You can optionally set the COM port in the procedure 'reinit()' with constantly raised the flag of activation in the library is being processed. 2. Parameter gl_count procedure 'getdata' indicates the number of received packets of COM-port. 3. Implemented AutoTrack pulling converter RS-485/USB (via SetupAPI) and reconnect to the specified port initialization.
    Downloads: 0 This Week
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  • 14

    GEMPlot

    GUI Program for GEMPAK

    GUI Program for plotting Model & ReAnalysis Data using GEMPAK. Users can perform Model Analysis, Surface Analysis, Objective Analysis, Cross-Sectional Analysis, Isentropic Analysis, and ReAnalysis. Soundings can also be plotted for a selection of upper air stations within the CONUS.
    Downloads: 0 This Week
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  • 15
    XNBC: neurobiology simulation tool

    XNBC: neurobiology simulation tool

    XNBC is a graphic application to simulate biologic neural networks.

    XNBC is a full featured application for computer naive neuroscientists. It simulates biological neural networks using graphic tools to edit neurons and networks, to run the simulation and to analyze results. Written in C, it runs on Unix and Windows. Web site : http://ticemed-sa.upmc.fr/xnbc/ All recent versions are on this site.
    Downloads: 0 This Week
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  • 16
    flot

    flot

    Attractive JavaScript charts for jQuery

    ...Works with Internet Explorer 6+, Chrome, Firefox 2+, Safari 3+ and Opera 9.5+. Additional examples are bundled with Flot. Also take a look at the Flot Usage Wiki for screenshots and stories from people and companies using Flot. Take a look at the the examples in examples/index.html; they should give a good impression of what flot can do, and the source code of the examples is probably the fastest way to learn how to use flot. Just include the JavaScript file after you've included jQuery. You need at least jQuery 1.2.6, but try at least 1.3.2 for interactive charts because of performance improvements in event handling. ...
    Downloads: 0 This Week
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  • 17
    Tockit tries to build a framework for Conceptual Knowledge Processing (CKP) and Formal Concept Analysis (FCA) in Java, using a component-based approach, XML formats and a three-tier architecture.
    Downloads: 1 This Week
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  • 18
    Arcadia is a light-weight, cross-platform, C++ desktop application designed for visualizing biological networks such as metabolic pathways.
    Downloads: 0 This Week
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  • 19

    BinaryView

    Show binary data

    BinaryView is able to show 2d binary data either as xy-plot or using a simple fragment shader. Standard shaders like simple color mapping or a relief shading for digital elevation data already exist, but you can also write your own shader. As an example, the screenshots show Mars MOLA topographic data taken from http://pds-geosciences.wustl.edu/missions/mgs/megdr.html
    Downloads: 0 This Week
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  • 20

    GnuplotIpp

    Gnuplot C/C++ interface (the real extension of gnuplot_i)

    ...Gnuplot_ipp provides the same light interface as gnuplot_i but makes it compatible with C++ as well. Finally, an extra C++ wrapper that takes care of opening and closing handles and makes code more organized is provided. All of this was performed using the C/C++'s maxima: "if you don't use it you don't pay for it". Both interfaces are available in C++, and in C you are given the original gnuplot_i interface.
    Downloads: 0 This Week
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  • 21
    Flatland VR

    Flatland VR

    Flatland is the virtual environment for Virtual Reality.

    Flatland is the virtual environment developed to perform these investigations. Using Flatland as the base environment scientists can visualize and explore both their data and the computations that manipulate that data. Imagine, if you will, a scientist able to examine the real-time results of a simulation and, when he notices an anomally he would like to investigate, he turns to the program running the simulation and examines the code, possibly changing it on the fly.
    Downloads: 0 This Week
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  • 22

    SVG_plot

    Plot data in SVG format using C++ library

    The SVG_plot C++ library allows, with a few lines of C++ code, to add plotting of data, held in STL containers like vector and map, output as SVG files that can be viewed by all modern browsers. 1D, 2D and Boxplots can be produced, and there are a myriad of options to control appearance. The plots are very high quality and can be expanded without loss of quality (no pixelation!) but are tiny, (compared for a Microsoft Excel plot, for example) and are easily compressible, making them...
    Downloads: 0 This Week
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  • 23
    Nuclei

    Nuclei

    Feature rich GUI for nuclear decay schemes

    Nuclei is a software tool for the displaying of nuclear decay schemes and estimated energy spectra, the calculation of angular γ emission anisotropies, and the automated search for appropriate decay cascade properties. It uses the Evaluated Nuclear Structure Data Files (ENSDF). A description of Nuclei's functionality and results obtained using its search method was published in Nuclear Instruments and Methods in Physics Research, Section A: M. Nagl, et al., NIM A 726 (2013), 17-30 [doi:10.1016/j.nima.2013.05.045] ------------------------- © 2012-2013, Matthias Nagl, II. Physikalisches Institut, Georg-August-Universität Göttingen http://physik2.uni-goettingen.de/research/2_hofs -------------------------
    Downloads: 4 This Week
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  • 24

    Runge

    Runge is an Interactive Solver for Systems of Differential Equations

    ...It uses Runge Rule to adjust step length to satisfy required precision on each step. It's effective. When it needs to compute derivatives (Jacobian matrix, for example) it does that analytically, i.e. without using numerical methods. It's portable. It works on Windows and Linux 32 and 64 bit and Mac OS X 64 bit. It's open. It allows you to implement and embed your own algorithms (aka "solvers"). It's easy to use. It allows to export results to MS Excel and MATLAB. It's multilingual. It currently supports Englis and Russian languages. ...
    Downloads: 1 This Week
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  • 25
    compare-results

    compare-results

    Program comparing Simulation Results for the SBML TestSuite

    Compare SBML Test Suite Results =============================== The [SBML Testsuite](http://sbml.org/Facilities/Online_SBML_Test_Suite) allows developers of ODE based simulators to test their implementation against a large number of test cases that test a wide aspect of the [SBML Specifications](http://sbml.org/Documents/Specifications). While implementing my simulator [RoadRunner](http://roadrunner.sf.net) I wanted to be able to compare it using a wider range of parameters: - filter for new tests - filter for tests with specific tags - mark elements that I know I did not implement
    Downloads: 0 This Week
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