Search Results for "network graph analysis"
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Showing 8 open source projects for "network graph analysis"
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Graphs.jl
An optimized graphs package for the Julia programming language
The goal of Graphs.jl is to offer a performant platform for network and graph analysis in Julia, following the example of libraries such as NetworkX in Python. Offers a set of simple, concrete graph implementations – SimpleGraph (for undirected graphs) and SimpleDiGraph (for directed graphs), an API for the development of more sophisticated graph implementations under the AbstractGraph type, and a large collection of graph algorithms with the same requirements as this API. -
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MolecularGraph.jl
Graph-based molecule modeling toolkit for cheminformatics
MolecularGraph.jl is a graph-based molecule modeling and chemoinformatics analysis toolkit fully implemented in Julia. -
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GraphNeuralNetworks.jl
Graph Neural Networks in Julia
GraphNeuralNetworks.jl is a graph neural network library written in Julia and based on the deep learning framework Flux.jl. -
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MultilayerGraphs.jl
Julia package for the creation and analysis of multilayer graphs
MultilayerGraphs.jl is a Julia package for the creation, manipulation and analysis of the structure, dynamics and functions of multilayer graphs. A multilayer graph is a graph consisting of multiple standard subgraphs called layers which can be interconnected through bipartite graphs called interlayers composed of the vertex sets of two different layers and the edges between them. The vertices in each layer represent a single set of nodes, although not all nodes have to be represented in every layer. -
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NeuralOperators.jl
DeepONets, Neural Operators, Physics-Informed Neural Ops in Julia
...It learns an operator, which is a mapping between infinite-dimensional function spaces. It can be used to resolve partial differential equations (PDE). Instead of solving by finite element method, a PDE problem can be resolved by training a neural network to learn an operator mapping from infinite-dimensional space (u, t) to infinite-dimensional space f(u, t). Neural operator learns a continuous function between two continuous function spaces. The kernel can be trained on different geometry, which is learned from a graph. Fourier neural operator learns a neural operator with Dirichlet kernel to form a Fourier transformation. ... -
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PDMats.jl
Uniform Interface for positive definite matrices of various structures
Uniform interface for positive definite matrices of various structures. Positive definite matrices are widely used in machine learning and probabilistic modeling, especially in applications related to graph analysis and Gaussian models. It is not uncommon that positive definite matrices used in practice have special structures (e.g. diagonal), which can be exploited to accelerate computation. PDMats.jl supports efficient computation on positive definite matrices of various structures. In particular, it provides uniform interfaces to use positive definite matrices of various structures for writing generic algorithms, while ensuring that the most efficient implementation is used in actual computation. -
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Catalyst.jl
Chemical reaction network and systems biology interface
Catalyst.jl is a symbolic modeling package for analysis and high-performance simulation of chemical reaction networks. Catalyst defines symbolic ReactionSystems, which can be created programmatically or easily specified using Catalyst's domain-specific language (DSL). Leveraging ModelingToolkit and Symbolics.jl, Catalyst enables large-scale simulations through auto-vectorization and parallelism. Symbolic ReactionSystems can be used to generate ModelingToolkit-based models, allowing the easy... -
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LightGraphs
An optimized graphs package for the Julia programming language
LightGraphs offers both (a) a set of simple, concrete graph implementations -- Graph (for undirected graphs) and DiGraph (for directed graphs), and (b) an API for the development of more sophisticated graph implementations under the AbstractGraph type. The project goal is to mirror the functionality of robust network and graph analysis libraries such as NetworkX while being simpler to use and more efficient than existing Julian graph libraries such as Graphs.jl. ...
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