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This tool provides an interactive visualization of the Wikipedia information space, primarily as a means of navigating the category hierarchy as well as the article network. The project is implemented in Java, utilizing the Java 3D package.
This was a student project in 2004-2005 at the University of Macau. This is the code from April 2005 that was finally uploaded to SourceForge in 2012 for archival purposes and to meet the demand from Wikipedia researchers world-wide.
Gavrog stands for "Generation, Analysis and Visualization of Reticular Ornaments using Gavrog". It is a Javalibrary together with a suite of interactive applications for the study of periodic net-like structures in space and their applications.
Genvlin is an easy to use graphical dataplotting environment. It also provides direct access to the data via scripting and a console. You can easily import, export, change, plot, ... all the data.
A framework for the visualization of multi-layer networks
MuLaViTo is a multi-layer visualization framework which allows to visualize relations between multiple graphs in derived applications. Moreover, it provides helpful means like k-shortest path algorithms, running algorithms in a separate thread, ...
Semtinel is an application framework for the semi-automatic creation, maintenance and analysis of hierarchical concept schemes (thesaurus, classification or ontology). Semtinel supports the development of new analysis methods and visualization techniques
OrthoInspector is a new software system for orthology/paralogy analysis. Its purpose is to facilitate the installation and the maintenance of a database describing orthology/inparalogy relations and to provide tools to exploit these data.
MouseGestureComposer is a graphical partition editor for visual artists and musicians. Basic elements are mouse movements, placed on a timeline segmented in measures, similar to classical music. Uses processing.org. Developed by numediart.org. A video tutorial is available here: http://vimeo.com/33442844
Main developper: François Zajéga - http://www.frankiezafe.org
MLPlot is a lightweight plotting library written in Java. It produces vector graphics in the SVG format but can also save EPS, JPG, PNG,..(if convert and inkscape are installed). The goal is to imitate MATLAB's 2D plotting functionality.
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Kabeja is a javalibrary for parsing DXF and converting to SVG (dxf2svg). The library supports the SAX-api and can integrated into other applications (Cocoon,Batik). Tools for converting svg to jpeg, tiff, png and pdf are included .
On The Mark is a video and image scoring system that allows one to mark any number of events and durations through a simple, easy-to-use graphical interface.
Solvere4D is a powerful, open-source, freely available post-processor that makes it easy for anyone to generate 3D animations of 3D rigid body kinematics and kinetics, with many visualization options.
JTreeMap is a Swing Component which represents a tree structure with rectangles (a TreeMap. See http://www.cs.umd.edu/hcil/treemap/). KTreeMap is the SWT component for treemapping (see http://en.wikipedia.org/wiki/Treemapping). It is an Eclipse plugin.
JEuclid is a complete MathML rendering solution, consisting of: a MathViewer application, command line converters from MathML to other formats, an ant task for autmated conversion, display components for AWT and Swing and a component for Apache Cocoon
A plugin for the VANTED system, called Glyph-based Link Exploration of Pathways (GLIEP). It helps to guide the navigation and exploration process of interconnected pathway visualization as well as insight into the overall interconnectivity.
MedioVis is concerned with the user-centred development of next generation visual information seeking systems for novice and nonexpert users. Various Browsing-oriented data exploration strategies are supported (overview & detail, filtering, zooming etc.)
Intrepid Bioinformatic's Integrative Genomics Viewer (IGV) modifications for viewing NGS files on IGV with data located on remote servers, accessed by web services.
PAICE is a rapid bioinformatics pathway visualization tool for KEGG-compatible accessions derived from Illumina Solexa next-gen and Affymetrix datasets. It colors KEGG pathways while appreciating detection-calls and duplicate gene copies.
Cca-forum unifies the Common Component Architecture tools and tutorial. It includes the CCA specifications, the Ccaffeine framework for HPC, and related tools. These support multilanguage scientific and parallel computing.
The final build of this software now is distributed in R, embedded in "RedeR': an R/Bioconductor package for hierarchical and nested network analysis... more about RedeR: http://bioconductor.org/packages/2.9/bioc/html/RedeR.html
VR Juggler is a virtual platform for virtual reality application development created at the Virtual Reality Applications Center at Iowa State University. Applications developed in VR Juggler can transparently move between a wide range of VR systems.