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Chisio is a free editing and layout tool for compound or hierarchically structured graphs based on the Eclipse Graph Editing Framework (GEF) that can be customized to build application-specific graph visualization tools by modifying its code-base.
!!! For latest version, please see !!!
http://code.google.com/p/chied
A Java application used in whole genome analysis to display SNPs in a genomic context. Supplementary data is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks.
SPIDR (Space Physics Interactive Data Resource) is a distributed database and application server network, built to select, visualize and model historical space weather data. SPIDR is a web-application and a grid of data mining web-services.
Cyberinfrastructure Shell (CIShell) is an open source, community-driven framework/application for the integration and utilization of datasets, algorithms, tools, and computing resources. Algorithms can be integrated using most programming languages.
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LogicAnalyzer is a framework as well as an application to operate a PC based logic analyzer. It's built using the Eclipse RCP and designed with extensibiliy in mind. Integrating new devices or creating completely new functionality is easy.
Chipster is a biologist-friendly analysis software for high-throughput data. It contains over 200 analysis tools for next generation sequencing (NGS), microarray and proteomics data. Users can combine tools in automatic analysis workflows, which can be shared. Chipster's interactive visualizations allow users to select datapoints and create new gene lists. For NGS data Chipster contains a built-in genome browser, which highlights SNPs and automatically indexes BAM files and calculates...
The Optics Project on the Web (WebTOP) is a 3D, interactive computer graphics system that visualizes optical phenomena. Its purpose is to help instructors teach and students learn about optics. It is a platform independent Java application that uses X3D.
The application „StockNews“ is to offer the possibility to the user to find out about the interaction between news, analyst opinions and stock exchange rates. Statistics and other relevant data about enterprises are available.
JRET (Java Reverse-Engineering Tool) is a program that is capable of reconstructing sequence diagrams from JUnit testsuites through dynamic analysis. It is written in Java/AspectJ and provides a GUI as well as command-line possibilities.
The application Crimeblips provides up-to-date crime statistics for Berlin (Germany). It maps and visualizes crimes, allowing users to identify crime hot spots, trends and general patterns. Bayesian algorithms are used to extract relevant information.
A real-time graph plotter. While your application is computing and logging results to a CSV file using the LiveGraph Writer API, the plotter lets you visualise and monitor the results live - by instantly plotting charts and graphs of the data.
ScapeToad is an easy to use application for the cartogram creation. Cartograms are deformed maps where the polygon size is proportional to a given statistical value. ScapeToad reads and writes Shapefiles.
See <https://github.com/christiankaiser/ScapeToad> for the latest version of the code.
It provides a graphical animated representation of a network simulation run (e.g. for ns-2). Further, common metrics are calculated and displayed. The tool is written in Java and supplies 2 frontends (applet and stand-alone application).
Currently, this project consists of a pure java math expression parser optimized for repeated evaluation. Development of an interactive 3D math visualization application based on this parser is planned for the future.
AbuGraph is a freely available Java application for the layout and visualization of directed graphs. Bound to a TCP port, it supports dynamic graph creation receiving commands from a telnet console or another third party application.
MASQOT-GUI is an open-source, platform-independent application for two-channel microarray spot quality control. Included is a set of tools for gridding, segmentation, quantification, multivariate spot quality assessment and data visualization.
Prenzl!! is a desktop application and a screen saver running artistic cellular automata. The application is based on an Eclipse architecture and the rules can be in native. Our mission is to provide a viewer and an SDK for this kind of art, called CArt.
A graphical data manipulation and processing system including data import, numerical analysis and visualisation. The software is written in Java and built upon the Netbeans platform to provide a modular desktop data manipulation application.
The JChemPaint Applet and Swing Application are Java programs for drawing 2D chemical structures like those found in most chemistry textbooks. It is based on the Chemistry Development Kit (cdk.sf.net). Downloads, tracker, and source code repository can be found on https://jchempaint.github.io
Graph Theorizer will be a java application that will help to teach and research Graph Theory. We will support Windows, Linux, and Mac in our first releases, while hopefully moving towards any platform that supports Java Standard Editon.
MirkE is a platform-independent Java application using Hibernate, HSQLDB and Colt designed to facilitate common but tedious calculations on spectrophotometric and colormetric data for molecular and cellular biology assays.
Feature extraction toolkit based on a wavelet multiscale
vision model. Includes 1D signal processing sample application for line
identification and classification of astronomical spectra.