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cy2fluxviz : Cytoscape 2 plugin for flux distribution visualization
cy2fluxviz - Cytoscape 2 Plugin for the visualization of flux distributions in networks.
Latest releases from
https://github.com/matthiaskoenig/cy2fluxviz
It's a "Hello World" implementation of SOM (Self-Organizing Map) of Teuvo Kohonen, otherwise called as the Kohonen map or Kohonen artificial neural networks.
Cuttlefish aims to be a highly extensible visualization and analysis platform for all kinds of network data.
IMPORTANT:
The Cuttlefish project has been migrated to github:
https://github.com/dev-cuttlefish/cuttlefish
AsphaltOpen is a project to visualize data collected during road asphalting operations. Asphalt contractors can use the software to visualize their operations, learn from the visualizations, and improve their processes continually.
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Released August 22, 2013
Lubuntu Blends: Biochemistry 13.04 (Raring) v5.44
Linux Kernel Image 3.8.0-29
Lubuntu Blends are pre-installed Wubi disk image remixes of Ubuntu and Debian Science meta packages, A custom boot loader allows installations to be copied and automatically booted from most external or USB flash drives.
Once up and running, use earlier Lubuntu Remix README instructions here until documentation is updated....
Bayesian Network tools in Java (BNJ) is an open-source suite of software tools for research and development using graphical models of probability. It is published by the Kansas State University Laboratory for Knowledge Discovery in Databases (KDD).
The Self-Organizing Map Maker for Education and Research. Features include 3D-visualization of the training process, various 2D and 3D map topologies, easy extensibility to additional topologies.
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This tool provides an interactive visualization of the Wikipedia information space, primarily as a means of navigating the category hierarchy as well as the article network. The project is implemented in Java, utilizing the Java 3D package.
This was a student project in 2004-2005 at the University of Macau. This is the code from April 2005 that was finally uploaded to SourceForge in 2012 for archival purposes and to meet the demand from Wikipedia researchers world-wide.
The final build of this software now is distributed in R, embedded in "RedeR': an R/Bioconductor package for hierarchical and nested network analysis... more about RedeR: http://bioconductor.org/packages/2.9/bioc/html/RedeR.html
The system searches synonyms (and related words) in Wikipedia. WikIDF generates index database of Wikipedia (for Russian, English, and German). The continuation of this project is "wikokit" at code.google.com
TeNeM (Telecommunications Network Model) is a PostgreSQL schema with PL/pgSQL functions and triggers intended to make with a fiber optic network management. It is also a GIS JUMP plug-in to edit and visualize the data. PostGIS is used to extend Postgre.
TNV visualizes pcap data to graphically depict network packets, links, and ports for network traffic analysis to facilitate learning what constitutes 'normal' behavior, investigating security events, or network troubleshooting.
Nevada is a tool for interactive visualization of dynamic networks. Unlike other dynamic network visualization tools it's focussing on visualizations preserving the user's mental-map. Import of Pajek files is supported.
SONIVIS:Tool aims at analysing social (virtual) information spaces like Wikis. These spaces are investigated by using different network definitions (collaboration/information networks). Clustering algorithms and statistiscal analyses are provided.
It provides a graphical animated representation of a network simulation run (e.g. for ns-2). Further, common metrics are calculated and displayed. The tool is written in Java and supplies 2 frontends (applet and stand-alone application).