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Cytoscape is a software platform for computational biology and
bioinformatics, useful for integrating data, and for visualizing and
performing calculations on molecular interaction networks
FileConv is a set of utility classes that allow java programmers to load/write 3d files of various formats to/from 3d applications and convert between various file formats so that people using different 3d applications can collaborate on the same project
Xi3D is an X3D renderer and browser for 3D Web content. It contains compliant parsers for VRML'97 types, a java scenegraph, XML bindings using SAX2, a content converter, full runtime and event model, DOM Level 2, vecmath
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NovaGrid is a light spreadsheet made with Python / Tkinter, based on Tktable. The objective of this project is to have a light spreasheet python object which can be used into larger projects.
The code is totaly written in Python (actualy 2.2.2).
tkCybernetics is a small grafical tool for rapidly setting up simulations of simple cybernetic systems. It was designed for didactic purpose but might be useful for the quick test of some circuit too.
JOpenChart is an open source Java library and toolkit for creating different kinds of charts and embedding them into web applications or Swing applications. It further supports interpolating data and plotting mathematical functions etc. pp.
Java Inventor is a Java interface to Open Inventor. Open Inventor (http://oss.sgi.com/projects/inventor/) is a popular API for developers of 3D applications. Java Inventor uses the Java Native Interface (JNI) to access the Open Inventor C++ libraries.
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FEVal, the Finite Element Evaluator written in Python, provides easy conversion for many Finite Element data formats (both binary and ascii). Mesh modification is very easy. Values of model results can be accessed given coordinates in physical space.
Atavi is an interactive genealogical data visualization tool. It uses XSLT to transform XML data into SVG (Scable Vector Graphics) images. Deploy it as a Java servlet and explore visualizations from a browser that supports SVG. GEDCOM import is planned.
The NetVis Module is a free open source web-based tool designed to simulate, analyze, and visualize social networks using data from csv files, online surveys, and geographically dispersed work teams. Built using php, mysql, and java for visualization.
ThunderGraph is another java charting library intended to draw 2D graphs. Additionally, it contains a package that presents a live component implementing zoomable, scrollable and 'hintable' graph. Written for JDK 1.1+, it may be used in MS IE applets.
jChart is a free Java library for drawing complex business & scientific charts. It may be used in Java applications and applets as a Swing-like GUI component, and also in servlets to publish the charts on the Web in several formats.
JViz is a prototype 3d visualization application that was created to help beginning Java programmers understand the structure, design and coding habits of their Java programs, and which parts of their programs need the most improvement.
Height Map Editor is a program meant for editing, generating and manipulating height maps (terrains) that can be used in terrain rendering engines, or even as clouds.
Visualization System is a server application for presenting and manipulating XML-based adapted multimedia data, useful eg. in mobile environement. It is component based framework for additional modules developement.
OpenLabel is a label placement tool and decluttering algorithm for OpenMap. Labels are placed in full conformance with applicable cartographic specifications and conventions - without overlap or ambiguity.
The MathForge Application Environment provides users a broad range of Java-based math tools (calculation, visualization, presentation and communication via MathML) and allows developers to leverage existing code while extending MathForge.