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Amide's a Medical Image Data Examiner: Amide is a tool for viewing, registering, and analyzing anatomical and functional volumetric medical imaging data sets.
3DBrainExplorer is a lightweight OpenGL-based 3D renderer for scientific visualization of volumetric data (NIfTI) featuring real-time image manipulation, AAL brain labels (Tzourio-Mazoyer et al., 2002), SPM5 statistical images and stereo display.
Ogles strives to provide an open source data model for neuroscientific data visualization and analytics. Ogles started out as a planning system for frame based stereotactic neurosurgery.
Ogles(1) is discontinued.
Release candidate (RC) is Ogles2b.
Ogles is accompanied by a simple DICOM reader
and NIfTI converting tool (Sdr2).
SSLTool is a Matlab based toolbox for bioelectromagnetic data (EEG/MEG) visualization, surface Laplacian calculation and modeling. It can compute surface Laplacian on realistic head surfaces given by a triangular mesh. It has a friendly GUI.
This is a sophisticated & integrated simulation and analysis environment for dynamical systems models of physical systems (ODEs, DAEs, maps, and hybrid systems). It supports symbolic math, optimization, continuation, data analysis, biological apps...
XNBC is a graphic application to simulate biologic neural networks.
XNBC is a full featured application for computer naive neuroscientists. It simulates biological neural networks using graphic tools to edit neurons and networks, to run the simulation and to analyze results. Written in C, it runs on Unix and Windows.
Web site : http://ticemed-sa.upmc.fr/xnbc/
All recent versions are on this site.
A Library for Interactive Modelling and Visualisation
The OpenCMISS-Zinc Library (opencmiss.org/zinc), or Zinc, is a software library for building interactive graphical modelling and visualisation applications.
Models are represented in Zinc as mathematical fields defined over domains, including finite elements with support for high-order basis functions, complex parameter mappings and time variation, and image-based fields. Further fields can be defined by mathematical expressions and algorithms on existing fields, including image...
This is a standalone, all in one Edge Detector that is mainly running on GPU using the CUDA technology. Each algorithm also has an OpenCV counterpart which is the closest one in terms of speed.
This project is partly based on the Sobel Filter sample available as part of the CUDA SDK.
This project also partly uses the OpenCV library to load different types of image.
This program includes: Prewitt filter, Roberts Cross, Canny edge detector and finally Sobel filter with the ability to modify...
A powerful, versatile tool for offilne spike analysis and sorting
WaveSorter emphasizes dynamic visualization and versatility. Slider controls let the user select any coefficient or sample from any of several transforms, which can then be plotted to either axis of a 2D histogram (scatterplot). Within the waveform space, cursor-based controls let the user select subregions of the waveform space or individual waveforms to view. The user may cluster waveforms manually or via one of several popular clustering programs. The classification along with waveform...
Deploy in 115+ regions with the modern database for every enterprise.
MongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
Matlab tool for plotting multi-channel biomedical signals.
It is designed for researchers on both engineering and medicine who have to collaborate to visualize and analyze signals.
It is the ideal tool to plot electroencephalogram (EEG), Foetal Heart Rate (FHR) and many other signals with the standard tools used in clinical routine.
CoactivationMap is a graphic user interface to browse through a map of functional co-activations of the human brain. Click on a region, and observe which other regions are likely to be connected
MASyV (Multi-Agent System Visualization) enables one to write agent-based models/cellular automata, eg. in C, visualize them in real time & capture to movie file with MASyVs GUI & message passing lib. Includes examples: Hello World, ants, viral infection
Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decision tree controlled by analytical statistics.
Mainly a browser for medical patients documents. For now, it works for displaying radiology images in DICOM format. It supports Query/Retrieve.
Build on Python, wxPython and ZODB.
BLIX is a cross-platform set of Python extension modules and Python scripts for Blender (www.blender.org). These scripts add camera calibration, 3D reconstruction and rigid body orientation to Blender.
Computer Controlled Optical Microscopy is a package to enable camera equipped microscopes to generate multi-modal time-lapse image sequences
of 3D volumes. This is achieved by periodically changing optical settings, xyz positions and acquiring images.