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Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.
Efficient and customizable TreeLayout Algorithm in Java, for NetBeans
Efficiently create compact, highly customizable tree layouts - Based on Walker's algorithm with enhancements suggested by Buchheim, Jünger, and Leipert the software builds tree layouts in linear time. I.e. even trees with many nodes are built fast.
Downloads are available at https://sourceforge.net/projects/treelayout/files/.
For detailed documentation look at the TreeLayout web site http://treelayout.sourceforge.net/.
Peklo is a graph editor and an environment for visualizing and comparing different algorithms for some graph-theoretic problems, e.g. flows, shortest path, minimum spanning tree.
The flNeuronTool allows users to reconstruct and proofread neuronal morphologies in light microscopy images. The system incorporates automatic tracing and manual editing of neuron reconstruction into a cooperative 3D interactive visualization-assisted environment, which is a powerful tool for analysis of complex neuronal images.
JTreeMap is a Swing Component which represents a tree structure with rectangles (a TreeMap. See http://www.cs.umd.edu/hcil/treemap/). KTreeMap is the SWT component for treemapping (see http://en.wikipedia.org/wiki/Treemapping). It is an Eclipse plugin.
VarPlan is a web application to visualize and manage variants as tree like graph view. The approach is to keep the overview on hundreds of variants with their meta informations.
Angur is a XML visualization utility which helps users visualize XML files in node graphs as well as generating XML visually, without any XML knowledge.
Sanchay is a collection of tools and APIs for language researchers. It has some implementations of NLP algorithms, some flexible APIs, several user friendly annotation interfaces and Sanchay Query Language for language resources.
Avenzoar is a one-year exploration of renal cell carcinoma morphology and its related single nucleotide polymorphisms (SNPa) as a method of automating diagnosis of cancer by using a computer-aided decision tree controlled by analytical statistics.
A treemap visualization java library, to implement Shneiderman's treemap easily (http://www.cs.umd.edu/hcil/treemaps/). Shows efficiently tree data as a rectangle colored map. Usefull to monitor thousand of files in a little window.
Plantra-Trajectory Planning is a software to rebuild surfaces from cloud points, featuring shaded 3D visualization and path planning for robotics paths. It uses Voronoi diagram, Cyrus-Beck clipping, Delaunay triangulation and B-Splines.
C++ Widget Library for CGI/FastCGI applications based on Ajax. Test cases for Tomcat Server and XDAQ framework are available. Widgets included: Tab,Form,Button,Tree,LayoutContainer,Frame,Table,Dialog,FishEyeMenu,EventHandler, etc.
PolyTreeTable is a Swing Component that can display a graph where nodes have multiple parents (polyhierarchy). There is a focus node, a parent tree above, a child tree below, parents expand upwards. It is a JTable derivate with multiple columns.
Hydra3D is a 3-dimensional XML visualization and editing tool for UNIX variants and Windows. Documents are displayed as interactive 3D tree structures. Hydra3D uses QT for windowing, OpenGL for three-dimensional display, Xerces and Xalan for XML process
TreeDraw is a object-oriented Java class framework to aid in visualizing tree data strucures. It consists of a few abstract classes. If you derive your tree, nodes, and edges from these abstract classes, you can easily visualize your data structure.
Infomap is a Java component for displaying and manipulating nodal data. It gives the user the ability to visualize large graph or tree structures by means of expanding and collapsing portions of the structure and by easily zooming in and out.