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A documentation and report generator for systems biological models
...The purpose of SBML2LATEX is to provide a way to read the contents of XML-based SBML files. This is helpful and important for, e.g., error detection, proofreading and model communication.
GpsPrune is a java application to view and manage coordinate data, eg from GPS units. With it you can load a variety of text and Xml formats, view the data (in 2d and 3d), edit and convert the data, correlate photos and audio, create charts and more.
MLPlot is a lightweight plotting library written in Java. It produces vector graphics in the SVG format but can also save EPS, JPG, PNG,..(if convert and inkscape are installed). The goal is to imitate MATLAB's 2D plotting functionality.