Showing 343 open source projects for "documentation"

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  • 1
    atpbar

    atpbar

    Progress bars for threading and multiprocessing tasks on terminal

    Progress bars for threading and multiprocessing tasks on the terminal and Jupyter Notebook. atpbar can display multiple progress bars simultaneously growing to show the progresses of iterations of loops in threading or multiprocessing tasks. atpbar can display progress bars on the terminal and Jupyter Notebook. atpbar can be used with Mantichora. atpbar started its development in 2015 as part of Alphatwirl. atpbar prevented physicists from terminating their running analysis codes, which...
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  • 2
    PairPlots.jl

    PairPlots.jl

    Beautiful and flexible vizualizations of high dimensional data

    Beautiful and flexible visualizations of high-dimensional data. This package produces pair plots, otherwise known as corner plots or scatter plot matrices: grids of 1D and 2D histograms that allow you to visualize high-dimensional data. Pair plots are an excellent way to visualize the results of MCMC simulations, but are also a useful way to visualize correlations in general data tables. The default styles of this package roughly reproduce the output of the Python library corner.py for a...
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  • 3
    JDF.jl

    JDF.jl

    Julia DataFrames serialization format

    JDF is a DataFrames serialization format with the following goals, fast save and load times, compressed storage on disk, enabled disk-based data manipulation (not yet achieved), and support for machine learning workloads, e.g. mini-batch, sampling (not yet achieved). JDF stores a DataFrame in a folder with each column stored as a separate file. There is also a metadata.jls file that stores metadata about the original DataFrame. Collectively, the column files, the metadata file, and the...
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  • 4
    JuliaConnectoR

    JuliaConnectoR

    A functionally oriented interface for calling Julia from R

    This R-package provides a functionally oriented interface between R and Julia. The goal is to call functions from Julia packages directly as R functions. Julia functions imported via the JuliaConnectoR can accept and return R variables. It is also possible to pass R functions as arguments in place of Julia functions, which allows callbacks from Julia to R. From a technical perspective, R data structures are serialized with an optimized custom streaming format, sent to a (local) Julia TCP...
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  • 5
    PDMats.jl

    PDMats.jl

    Uniform Interface for positive definite matrices of various structures

    Uniform interface for positive definite matrices of various structures. Positive definite matrices are widely used in machine learning and probabilistic modeling, especially in applications related to graph analysis and Gaussian models. It is not uncommon that positive definite matrices used in practice have special structures (e.g. diagonal), which can be exploited to accelerate computation. PDMats.jl supports efficient computation on positive definite matrices of various structures. In...
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  • 6
    CondaPkg.jl

    CondaPkg.jl

    Add Conda dependencies to your Julia project

    Add Conda dependencies to your Julia project. This package is a lot like Pkg from the Julia standard library, except that it is for managing Conda packages. Conda dependencies are defined in CondaPkg.toml, which is analogous to Project.toml. CondaPkg will install these dependencies into a Conda environment specific to the current Julia project. Hence dependencies are isolated from other projects or environments. Functions like add, rm, status exist to edit the dependencies programmatically....
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  • 7
    DiffOpt.jl

    DiffOpt.jl

    Differentiating convex optimization programs w.r.t. program parameters

    DiffOpt.jl is a package for differentiating convex optimization programs (JuMP.jl or MathOptInterface.jl models) with respect to program parameters. Note that this package does not contain any solver. This package has two major backends, available via the reverse_differentiate! and forward_differentiate! methods, to differentiate models (quadratic or conic) with optimal solutions. Differentiable optimization is a promising field of convex optimization and has many potential applications in...
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  • 8
    PDFIO.jl

    PDFIO.jl

    PDF Reader Library for Native Julia.

    PDFIO is a native Julia implementation for reading PDF files. It's a 100% Julia implementation of the PDF specification. Other than a few well-established algorithms like flate decode (zlib library) or cryptographic operations (OpenSSL library) almost all of the APIs are written in native Julia. PDF files are in existence for over three decades. Implementations of the PDF writers are not always to the specification or they may even vary significantly from vendor to vendor. Every time, you...
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  • 9
    JuliaWorkshop

    JuliaWorkshop

    Intensive Julia workshop that takes you from zero to hero

    This is an intensive workshop for the Julia language, composed out of three 2-hour segments. It targets people already familiar with programming, so that the established basics such as for-loops are skipped through quickly and efficiently. Nevertheless, it assumes only rudimentary programming familiarity and does explain concepts that go beyond the basics. The goal of the workshop is to take you from zero to hero (regarding Julia): even if you know nothing about Julia, by the end you should...
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  • 10
    EAGO.jl

    EAGO.jl

    A development environment for robust and global optimization

    EAGO is an open-source development environment for robust and global optimization in Julia. EAGO is a deterministic global optimizer designed to address a wide variety of optimization problems, emphasizing nonlinear programs (NLPs), by propagating McCormick relaxations along the factorable structure of each expression in the NLP. Most operators supported by modern automatic differentiation (AD) packages (e.g., +, sin, cosh) are supported by EAGO and a number of utilities for sanitizing...
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  • 11
    HomotopyContinuation.jl

    HomotopyContinuation.jl

    A Julia package for solving systems of polynomials

    HomotopyContinuation.jl is a Julia package for solving systems of polynomial equations by numerical homotopy continuation. Many models in the sciences and engineering are expressed as sets of real solutions to systems of polynomial equations. We can optimize any objective whose gradient is an algebraic function using homotopy methods by computing all critical points of the objective function. An important special case is when the objective function is the euclidean distance to a given point....
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  • 12
    BlockArrays.jl

    BlockArrays.jl

    BlockArrays for Julia

    A block array is a partition of an array into blocks or subarrays, see Wikipedia for a more extensive description. This package has two purposes. Firstly, it defines an interface for an AbstractBlockArray block arrays that can be shared among types representing different types of block arrays. The advantage to this is that it provides a consistent API for block arrays. Secondly, it also implements two different types of block arrays that follow the AbstractBlockArray interface. The type...
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  • 13
    ChainRulesCore

    ChainRulesCore

    AD-backend agnostic system defining custom forward and reverse rules

    AD-backend agnostic system defining custom forward and reverse mode rules. This is the light weight core to allow you to define rules for your functions in your packages, without depending on any particular AD system. The ChainRulesCore package provides a light-weight dependency for defining sensitivities for functions in your packages, without you needing to depend on ChainRules itself. This will allow your package to be used with ChainRules.jl, which aims to provide a variety of common...
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  • 14
    MPI.jl

    MPI.jl

    MPI wrappers for Julia

    This is a basic Julia wrapper for the portable message-passing system Message Passing Interface (MPI). Inspiration is taken from mpi4py, although we generally follow the C and not the C++ MPI API. (The C++ MPI API is deprecated.) MPI is based on a single program, multiple data (SPMD) model, where multiple processes are launched running independent programs, which then communicate as necessary via messages. As the main entry point for users, MPI.jl provides a high-level interface which...
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  • 15
    BinaryBuilder

    BinaryBuilder

    Binary Dependency Builder for Julia

    Binary Dependency Builder for Julia. Building binary packages is a pain. BinaryBuilder follows a philosophy that is similar to that of building Julia itself; when you want something done right, you do it yourself. To that end, BinaryBuilder is designed from the ground up to facilitate the building of packages within an easily reproducible and reliable Linux environment, ensuring that the built libraries and executables are deployable to every platform that Julia itself will run on. Packages...
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  • 16
    BetaML.jl

    BetaML.jl

    Beta Machine Learning Toolkit

    The Beta Machine Learning Toolkit is a package including many algorithms and utilities to implement machine learning workflows in Julia, Python, R and any other language with a Julia binding. All models are implemented entirely in Julia and are hosted in the repository itself (i.e. they are not wrapper to third-party models). If your favorite option or model is missing, you can try to implement it yourself and open a pull request to share it (see the section Contribute below) or request its...
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  • 17
    InteractiveViz.jl

    InteractiveViz.jl

    Interactive visualization tools for Julia

    Julia already has a rich set of plotting tools in the form of the Plots and Makie ecosystems, and various backends for these. So why another plotting package? InteractiveViz is not a replacement for Plots or Makie, but rather a graphics pipeline system developed on top of Makie. It has a few objectives. To provide a simple API to visualize large or possibly infinite datasets (tens of millions of data points) easily. To enable interactivity, and be responsive even with large amounts of data....
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  • 18
    HCubature.jl

    HCubature.jl

    Pure-Julia multidimensional h-adaptive integration

    The HCubature module is a pure-Julia implementation of multidimensional "h-adaptive" integration. then hcubature(f, a, b) computes the integral, adaptively subdividing the integration volume into smaller and smaller pieces until convergence is achieved to the desired tolerance (specified by optional rtol and atol keyword arguments. Because hcubature is written purely in Julia, the integrand f(x) can return any vector-like object (technically, any type supporting +, -, * real, and norm: a...
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  • 19
    ImplicitGlobalGrid.jl

    ImplicitGlobalGrid.jl

    Distributed parallelization of stencil-based GPU and CPU applications

    ImplicitGlobalGrid is an outcome of a collaboration of the Swiss National Supercomputing Centre, ETH Zurich (Dr. Samuel Omlin) with Stanford University (Dr. Ludovic Räss) and the Swiss Geocomputing Centre (Prof. Yuri Podladchikov). It renders the distributed parallelization of stencil-based GPU and CPU applications on a regular staggered grid almost trivial and enables close to ideal weak scaling of real-world applications on thousands of GPUs [1, 2, 3]. ImplicitGlobalGrid relies on the...
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  • 20
    SciML Style Guide for Julia

    SciML Style Guide for Julia

    A style guide for stylish Julia developers

    The SciML Style Guide is a style guide for the Julia programming language. It is used by the SciML Open Source Scientific Machine Learning Organization. As such, it is open to discussion with the community. If the standard for code contributions is that every PR needs to support every possible input type that anyone can think of, the barrier would be too high for newcomers. Instead, the principle is to be as correct as possible to begin with, and grow the generic support over time. All...
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  • 21
    GMT.jl

    GMT.jl

    Generic Mapping Tools Library Wrapper for Julia

    The Generic Mapping Tools, GMT, is an open source collection of tools for manipulating geographic and Cartesian data sets (including filtering, trend fitting, gridding, projecting, etc.) and producing PostScript illustrations ranging from simple x–y plots via contour maps to artificially illuminated surfaces and 3D perspective views. This link will take you to an impressive collection of figures made with GMT. The GMT Julia wrapper was designed to work in a way the close as possible to the...
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  • 22
    Wavelets.jl

    Wavelets.jl

    A Julia package for fast discrete wavelet transforms and utilities

    A Julia package for fast wavelet transforms (1-D, 2-D, 3-D, by filtering or lifting). The package includes discrete wavelet transforms, column-wise discrete wavelet transforms, and wavelet packet transforms. 1st generation wavelets using filter banks (periodic and orthogonal). Filters are included for the following types: Haar, Daubechies, Coiflet, Symmlet, Battle-Lemarie, Beylkin, Vaidyanathan. 2nd generation wavelets by lifting (periodic and general type including orthogonal and...
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  • 23
    FFTW.jl

    FFTW.jl

    Julia bindings to the FFTW library for fast Fourier transforms

    This package provides Julia bindings to the FFTW library for fast Fourier transforms (FFTs), as well as functionality useful for signal processing. These functions were formerly a part of Base Julia. Users with a build of Julia based on Intel's Math Kernel Library (MKL) can use MKL for FFTs by setting a preference in their top-level project by either using the FFTW.set_provider!() method, or by directly setting the preference using Preferences.jl. Note that this choice will be recorded for...
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  • 24
    Roots.jl

    Roots.jl

    Root finding functions for Julia

    This package contains simple routines for finding roots, or zeros, of scalar functions of a single real variable using floating-point math. The find_zero function provides the primary interface. The basic call is find_zero(f, x0, [M], [p]; kws...) where, typically, f is a function, x0 a starting point or bracketing interval, M is used to adjust the default algorithms used, and p can be used to pass in parameters. Bisection-like algorithms. For functions where a bracketing interval is known...
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  • 25
    nb-clean

    nb-clean

    Clean Jupyter notebooks of outputs, metadata, and empty cells

    nb-clean cleans Jupyter notebooks of cell execution counts, metadata, outputs, and (optionally) empty cells, preparing them for committing to version control. It provides both a Git filter and pre-commit hook to automatically clean notebooks before they're staged, and can also be used with other version control systems, as a command line tool, and as a Python library. It can determine if a notebook is clean or not, which can be used as a check in your continuous integration pipelines....
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