Search Results for "linux packages" - Page 4
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Showing 97 open source projects for "linux packages"
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ComplexHeatmap
Make Complex Heatmaps
ComplexHeatmap is an R/Bioconductor package by Zuguang Gu et al. designed to create highly flexible, complex, richly annotated heatmaps and related visualizations. It allows arranging multiple heatmaps, adding annotations, combining heatmaps, customizing colors, layouts, and integrating other plots. Often used in genomics/bioinformatics to show expression, methylation, etc., with sidebars, annotations, clustering, etc. Highly customizable layout: combining different heatmaps, arranging and... -
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sf (Simple Features)
Simple Features for R
sf is an R package that implements “simple features” (standardized vector spatial data) for R. It allows spatial vector data (points, lines, polygons etc.) to be represented as records in data frames (or tibbles) with geometry list columns, and performs spatial operations (geometry operations, coordinate reference system transformations, reading/writing spatial data, integration with spatial databases etc.). It interfaces to GDAL, GEOS, PROJ libraries for robust operations. Reading and... -
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New Terrain and 3D Map System
a very lightweight advanced terrain-rendering and 3D map rendering sys
A very lightweight advanced terrain-rendering and 3D map rendering system. Minimal dependencies: OpenGL, SDL. It's distrib in 2-3 separate modules: 1. the C++ implementation of the terrain- and/or surface- rendering Algorithms I have developed: both a multithread and a non-multithread variant is relaeased. 2. Seme as at point 1. , but with a road-network rendering and collision-detection module I wrote before. It also adds some trees at the top of the terrain. (multitread vesion not... -
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scipion-xmipp
Image processing framework to integrate EM software packages.
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated... -
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mhGui
A gui for linux users of miniHomer, a GPS tracker
miniHomer is a GPS tracker based on a skyTraq GPS chip. This tools helps you to manage the device if you use Linux as your favourite Operating System. As the tool is written in QT/jquey/HTML/javascript, there is a good change that it will run on other OSes. Version 1.0 should be good enough to be offered to the public Please see the files section for RPM packages -
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Portable Linux
Portable Ubuntu Linux for Scientific Computing
Released August 22, 2013 Lubuntu Blends: Biochemistry 13.04 (Raring) v5.44 Linux Kernel Image 3.8.0-29 Lubuntu Blends are pre-installed Wubi disk image remixes of Ubuntu and Debian Science meta packages, A custom boot loader allows installations to be copied and automatically booted from most external or USB flash drives. Once up and running, use earlier Lubuntu Remix README instructions here until documentation is updated. https://sourceforge.net/projects/portable-linux/files/ Installation 1. ... -
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The final build of this software now is distributed in R, embedded in "RedeR': an R/Bioconductor package for hierarchical and nested network analysis... more about RedeR: http://bioconductor.org/packages/2.9/bioc/html/RedeR.html
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MOPlot - visualization program for fast Molecular Orbitals Plotting (and other stuff - please, read the full description) from the outputs of the Gaussian 09-94, Molcas, Gamess/US, Firefly quantum chemical calculation packages.
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Franklin Math is an open source Java symbolic computer algebra system (CAS), with similarities to commercial math packages such as MATLAB or Mathematica. It allows numeric and symbolic calculations, with built-in functions including plotting commands.
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PyMaTi is a simple and easy to use GUI for numerical and scientific computing in Python. It surrounds well know packages NumPy and Matplotlib and provides possibility to immediately play with numerical python from intuitive user interface.
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Analyze 7.5 (img/hdr) files are used by many medical imaging packages for data export. This small script converts these Analyze 7.5 image files to comma delimited text files, which are suitable for down stream applications.
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The Beamer class is a LaTeX class for creating presentations using a video projector. THIS PAGE IS NO LONGER MAINTAINED. Home page: https://github.com/josephwright/beamer Mailing lists: http://groups.google.com/group/beamer-class
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Open Source Remote Sensing OSSIM project, pronounced "awesome", will leverage existing algorithms/tools/packages from the open source community in construction of the ultimate Remote Sensing/Image Processing/GIS package. osgPlanet extends OSSIM and Op
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A package of programs for performing extended Hueckel calculations on molecules and solids and visualizing the results. Visualization functionality for some quantum packages (ADF and LMTO) is also provided.
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PyVisi is the Python visualisation interface: a generic Python-based interface to many different scientific visualisation packages. PyVisi is intended for use in both standard and high-performance computing environments, and with the escript package.
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JVClifford is composed of Java/Java3D packages and executables jars that provide for Clifford element definition, Geometric Algebra operations and geometric scenes modelling and rendering using the n-dimensional geometric algebra affine model
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Guided Logic Exercises is a tool that can be used for simplifying logical expressions. It is a java applet that makes use of underlying packages designed for the applet.
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toxic is a modern, physically correct global illumination renderer aiming to produce photorealistic images and animations. A number of plug-ins are under development to allow using toxic with various open source and commercial 3D modeling packages.
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Computational modelling is a interdisciplinary field spanning many techniques and programming languages. AgenTools is a project dedicated to establishing increased modularity in scientific computing packages and a portal linking to other existing project
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The Graph Visualization Framework is a set of Java 2 packages that can serve as a foundation for applications that manipulate or visualize graph structures. "Royere" is built on the GVF and includes XML support, SVG output, pluggable layouts, editing.
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Java classes and packages for digital image processing under ImageJ using the Colt Java API, and an enhanced Plugins Control Panel for ImageJ
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MatPy is a Python package for numerical linear algebra and plotting with a MatLab-like interface. It currently consists of wrappers around Numeric and Gnuplot packages, but eventually may be implemented directly in C/C++, or as interface to Octave.