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JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
MathFrame++ allows scientific C++ applications to be easily coded and provides various services to these applications like drawing in 2D/3D, data entry dialogs, clipboard, printing - all this, while not having to deal with windows programming directly.
EdgeExpressDB (eeDB) is a federated data abstraction system designed for integrating, interpreting, and visualizing very large biology datasets. It is designed for scaling beyond Petabytes and 10^13 objects. http://fantom.gsc.riken.jp/4/edgeexpress
OWLViz4U (OWLViz for Unicode) is an extension of OWLViz for supporting Unicode based ontologies, which is an OWL visuliazation tool used with the Protege OWL plugin. OWLViz4U is part of the W3China Open Source Project (http://www.w3china.org).
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ProgPorts is an administrative and easy user interface to hundreds of proteomics, molecular dynamics, and protein crystallography programs. It is a hybrid of the prog/setup system, developed at Johns Hopkins University, and GNU-Darwin ports system.
PyGTS is a python package used to construct, manipulate, and perform computations on triangulated surfaces. It is a hand-crafted and pythonic binding for the GNU Triangulated Surface (GTS) Library. THIS PROJECT IS NOT BEING MAINTAINED.
FCOLLADA based COLLADA plugins for Maya and 3DSMax. Newer plugins with 1.5 support and support the files mentioned in "Papervision3D Essentials" by Paul Tondeur are available at http://opencollada.org . Please use this project for FCOLLADA related topi
Angela is a Mandelbrot Set explorer written in Java with Multi-Agent programming paradigm. Supports multithreading, logic core number detection, interesting point saving/loading, color editing and image saving.
equal III is an equation visualization tool. It's possible to graph f(x,y) = 0. So it is able to graph systems of equations and inequations, and do graphic change analysis.
Garmon (Gnome/GTK+ Car Monitor) is a tool that lets you connect to an OBD-II compliant vehicle using an ELM327 based scanning device. It supports monitoring live and freeze frame data as well as reading and clearing DTCs. It is written in python.
WebBabel is a python web application using OpenBabel to convert files
from one format to another.
It runs under Windows, Mac or Linux on your desktop, workstation or laptop.
It uses the Jmol (or Marvin) viewer to show the structures being converted.
FElt is an open source system for finite element analysis, primarily for mechanical problems. FElt includes command line tools, an X11 interface for pre- and post-processing, and a Windows editor interface with some post-processing capabilities.
A command line tool for generating timing diagrams from ASCII input files. The input files use a structured language to represent signal state transitions and interdependencies. Raster image output support is provided by ImageMagick.
MeshView is a simple viewer for the simplest possible 3d triangle mesh structure. It is based on SDL and opengl. MeshView aims at helping to rapid-prototype algorithms generating 3d-triangle-meshes.
NetIcon is a utility that sits in the Windows task bar and shows your network throughput. Requires WinPcap. NetIcon was modeled after Process Explorer, which only shows the CPU and IO load. Additionally it shows a hilbert curve "netblob" diagram.
This library provides an easy interface to Gnuplot (http://www.gnuplot.info/) from OCaml (http://caml.inria.fr/) for static 2D and 3D graphs and simple animations. This library aims to be portable on all platforms OCaml runs on.
GenMAPP is an application designed to visualize genomic data on maps representing biological pathways and other groupings of genes. GenMAPP also includes tools for performing global analysis of genomic data in the context of the Gene Ontology hierarchy.