Open Source Linux Data Science Tools
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Data Science Tools for Linux
View 14 business solutionsBrowse free open source Data Science tools and projects for Linux below. Use the toggles on the left to filter open source Data Science tools by OS, license, language, programming language, and project status.
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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ggplot2
An implementation of the Grammar of Graphics in R
ggplot2 is a system written in R for declaratively creating graphics. It is based on The Grammar of Graphics, which focuses on following a layered approach to describe and construct visualizations or graphics in a structured manner. With ggplot2 you simply provide the data, tell ggplot2 how to map variables to aesthetics, what graphical primitives to use, and it will take care of the rest. ggplot2 is over 10 years old and is used by hundreds of thousands of people all over the world for plotting. In most cases using ggplot2 starts with supplying a dataset and aesthetic mapping (with aes()); adding on layers (like geom_point() or geom_histogram()), scales (like scale_colour_brewer()), and faceting specifications (like facet_wrap()); and finally, coordinating systems. ggplot2 has a rich ecosystem of community-maintained extensions for those looking for more innovation. ggplot2 is a part of the tidyverse, an ecosystem of R packages designed for data science. -
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Rodeo
A data science IDE for Python
A data science IDE for Python. RODEO, that is an open-source python IDE and has been brought up by the folks at yhat, is a development environment that is lightweight, intuitive and yet customizable to its very core and also contains all the features mentioned above that were searched for so long. It is just like your very own personal home base for exploration and interpretation of data that aims at Data Scientists and answers the main question, "Is there anything like RStudio for Python?" Rodeo makes it very easy for its users to explore what is created by them and also alongside allows the users to Inspect, interact, compare data frames, plots and even much more. It is an IDE that has been built especially for data science/Machine Learning in Python and you can also very simply think of it as a light weight alternative to the IPython Notebook. -
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Quadratic
Data science spreadsheet with Python & SQL
Quadratic enables your team to work together on data analysis to deliver better results, faster. You already know how to use a spreadsheet, but you’ve never had this much power before. Quadratic is a Web-based spreadsheet application that runs in the browser and as a native app (via Electron). Our goal is to build a spreadsheet that enables you to pull your data from its source (SaaS, Database, CSV, API, etc) and then work with that data using the most popular data science tools today (Python, Pandas, SQL, JS, Excel Formulas, etc). Quadratic has no environment to configure. The grid runs entirely in the browser with no backend service. This makes our grids completely portable and very easy to share. Quadratic has Python library support built-in. Bring the latest open-source tools directly to your spreadsheet. Quickly write code and see the output in full detail. No more squinting into a tiny terminal to see your data output. -
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XGBoost
Scalable and Flexible Gradient Boosting
XGBoost is an optimized distributed gradient boosting library, designed to be scalable, flexible, portable and highly efficient. It supports regression, classification, ranking and user defined objectives, and runs on all major operating systems and cloud platforms. XGBoost works by implementing machine learning algorithms under the Gradient Boosting framework. It also offers parallel tree boosting (GBDT, GBRT or GBM) that can quickly and accurately solve many data science problems. XGBoost can be used for Python, Java, Scala, R, C++ and more. It can run on a single machine, Hadoop, Spark, Dask, Flink and most other distributed environments, and is capable of solving problems beyond billions of examples. -
Photo and Video Editing APIs and SDKsUnlock Picsart's full editing suite by embedding our Editor SDK directly into your platform. Offer your users the power of a full design suite without leaving your site.
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DearPyGui
Graphical User Interface Toolkit for Python with minimal dependencies
Dear PyGui is an easy-to-use, dynamic, GPU-Accelerated, cross-platform graphical user interface toolkit(GUI) for Python. It is “built with” Dear ImGui. Features include traditional GUI elements such as buttons, radio buttons, menus, and various methods to create a functional layout. Additionally, DPG has an incredible assortment of dynamic plots, tables, drawings, debuggers, and multiple resource viewers. DPG is well suited for creating simple user interfaces as well as developing complex and demanding graphical interfaces. DPG offers a solid framework for developing scientific, engineering, gaming, data science and other applications that require fast and interactive interfaces. The Tutorials will provide a great overview and links to each topic in the API Reference for more detailed reading. Complete theme and style control. GPU-based rendering and efficient C/C++ code. -
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Milvus
Vector database for scalable similarity search and AI applications
Milvus is an open-source vector database built to power embedding similarity search and AI applications. Milvus makes unstructured data search more accessible, and provides a consistent user experience regardless of the deployment environment. Milvus 2.0 is a cloud-native vector database with storage and computation separated by design. All components in this refactored version of Milvus are stateless to enhance elasticity and flexibility. Average latency measured in milliseconds on trillion vector datasets. Rich APIs designed for data science workflows. Consistent user experience across laptop, local cluster, and cloud. Embed real-time search and analytics into virtually any application. Milvus’ built-in replication and failover/failback features ensure data and applications can maintain business continuity in the event of a disruption. Component-level scalability makes it possible to scale up and down on demand. -
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DAT Linux
The data science OS
DAT Linux is a Linux distribution for data science. It brings together all your favourite open-source data science tools and apps into a ready-to-run desktop environment. https://datlinux.com It's based on Lubuntu, so it’s easy to install and use. The custom DAT Linux Control Panel provides a centralised one-stop-shop for running and managing dozens of data science programs. DAT Linux is perfect for students, professionals, academics, or anyone interested in data science who doesn’t want to spend endless hours downloading, installing, configuring, and maintaining applications from a range of sources, each with different technical requirements and set-up challenges. -
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Nuclio
High-Performance Serverless event and data processing platform
Nuclio is an open source and managed serverless platform used to minimize development and maintenance overhead and automate the deployment of data-science-based applications. Real-time performance running up to 400,000 function invocations per second. Portable across low laptops, edge, on-prem and multi-cloud deployments. The first serverless platform supporting GPUs for optimized utilization and sharing. Automated deployment to production in a few clicks from Jupyter notebook. Deploy one of the example serverless functions or write your own. The dashboard, when running outside an orchestration platform (e.g. Kubernetes or Swarm), will simply be deployed to the local docker daemon. The Getting Started With Nuclio On Kubernetes guide has a complete step-by-step guide to using Nuclio serverless functions over Kubernetes. -
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NannyML
Detecting silent model failure. NannyML estimates performance
NannyML is an open-source python library that allows you to estimate post-deployment model performance (without access to targets), detect data drift, and intelligently link data drift alerts back to changes in model performance. Built for data scientists, NannyML has an easy-to-use interface, and interactive visualizations, is completely model-agnostic, and currently supports all tabular classification use cases. NannyML closes the loop with performance monitoring and post deployment data science, empowering data scientist to quickly understand and automatically detect silent model failure. By using NannyML, data scientists can finally maintain complete visibility and trust in their deployed machine learning models. When the actual outcome of your deployed prediction models is delayed, or even when post-deployment target labels are completely absent, you can use NannyML's CBPE-algorithm to estimate model performance. -
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xsv
A fast CSV command line toolkit written in Rust
xsv is a command line program for indexing, slicing, analyzing, splitting and joining CSV files. Commands should be simple, fast and composable. Simple tasks should be easy. Performance trade offs should be exposed in the CLI interface. Composition should not come at the expense of performance. Let's say you're playing with some of the data from the Data Science Toolkit, which contains several CSV files. Maybe you're interested in the population counts of each city in the world. So grab the data and start examining it. The next thing you might want to do is get an overview of the kind of data that appears in each column. The stats command will do this for you. The xsv table command takes any CSV data and formats it into aligned columns using elastic tabstops. These commands are instantaneous because they run in time and memory proportional to the size of the slice (which means they will scale to arbitrarily large CSV data). -
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ClearML
Streamline your ML workflow
ClearML is an open source platform that automates and simplifies developing and managing machine learning solutions for thousands of data science teams all over the world. It is designed as an end-to-end MLOps suite allowing you to focus on developing your ML code & automation, while ClearML ensures your work is reproducible and scalable. The ClearML Python Package for integrating ClearML into your existing scripts by adding just two lines of code, and optionally extending your experiments and other workflows with ClearML powerful and versatile set of classes and methods. The ClearML Server storing experiment, model, and workflow data, and supports the Web UI experiment manager, and ML-Ops automation for reproducibility and tuning. It is available as a hosted service and open source for you to deploy your own ClearML Server. The ClearML Agent for ML-Ops orchestration, experiment and workflow reproducibility, and scalability. -
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Data Science Specialization
Course materials for the Data Science Specialization on Coursera
The Data Science Specialization Courses repository is a collection of materials that support the Johns Hopkins University Data Science Specialization on Coursera. It contains the source code and resources used throughout the specialization’s courses, covering a broad range of data science concepts and techniques. The repository is designed as a shared space for code examples, datasets, and instructional materials, helping learners follow along with lectures and assignments. It spans essential topics such as R programming, data cleaning, exploratory data analysis, statistical inference, regression models, machine learning, and practical data science projects. By providing centralized resources, the repo makes it easier for students to practice concepts and replicate examples from the curriculum. It also offers a structured view of how multiple disciplines—programming, statistics, and applied data analysis—come together in a professional workflow. -
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Deep Learning course
Slides and Jupyter notebooks for the Deep Learning lectures
Slides and Jupyter notebooks for the Deep Learning lectures at Master Year 2 Data Science from Institut Polytechnique de Paris. This course is being taught at as part of Master Year 2 Data Science IP-Paris. Note: press "P" to display the presenter's notes that include some comments and additional references. This lecture is built and maintained by Olivier Grisel and Charles Ollion. -
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NVIDIA Merlin
Library providing end-to-end GPU-accelerated recommender systems
NVIDIA Merlin is an open-source library that accelerates recommender systems on NVIDIA GPUs. The library enables data scientists, machine learning engineers, and researchers to build high-performing recommenders at scale. Merlin includes tools to address common feature engineering, training, and inference challenges. Each stage of the Merlin pipeline is optimized to support hundreds of terabytes of data, which is all accessible through easy-to-use APIs. For more information, see NVIDIA Merlin on the NVIDIA developer website. Transform data (ETL) for preprocessing and engineering features. Accelerate your existing training pipelines in TensorFlow, PyTorch, or FastAI by leveraging optimized, custom-built data loaders. Scale large deep learning recommender models by distributing large embedding tables that exceed available GPU and CPU memory. Deploy data transformations and trained models to production with only a few lines of code. -
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Catbird Linux
Linux for content creation, web scraping, coding, and data analysis.
Catbird Linux is a USB pluggable Live Linux operating system built for media creation, web scraping, and software coding. It is the daily driver you want for retrieving data, making videos or podcasts, and making software tools to automate the repetitive tasks. It is ready for work in Python, Lua, and Go languages, with numerous packages for web scraping or downloading data via API calls. Using Catbird Linux, it is possible to accomplish in depth stock market analysis, track weather trends, follow social media sentiment, or do other tasks in data science. The system is programmer friendly, ready for creating and running the tools you use to measure and understand your world. In addition to search and GPT tools, you have what you need to take notes, write reports or presentations, record and edit audio or video. Under the hood, the system is tuned to be fast and responsive on modest equipment, with a real time kernel and lightweight tiling / tabbing window manager. -
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Adele
Adhoc Data Exploration - Live & Easy
Adele was developed to simplify the daily work with data. Use it as a swiss knife to fill the gap between your work with spreadsheet application like MS Excel and enterprise servers like SAP ERP. Specialized tools like Rapid Miner, KNIME or similiary stuff should not be replaced. But Adele is designed for business people working with spreadsheet applications to analyse their data. There are many technical concepts in an easier way included. For example realtime OLAP, transformations, charts, analysis tools,... Connectors (e.g. JDBC, SAP ABAP, OData) can be used to pre-analyse the data and extract it without saving the data as text files. A plugin concept for enhancements are available. Enjoy! Its free for commercial use too. Adele runs without installation from USB stick for Windows, Linux and MacOSX. Last added changes: - data science tools (V1, IQR) - export to remote and desktop databases (mysql,sqlite, ms access) - internet features for emails and domains -
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AWS SDK for pandas
Easy integration with Athena, Glue, Redshift, Timestream, Neptune
aws-sdk-pandas (formerly AWS Data Wrangler) bridges pandas with the AWS analytics stack so DataFrames flow seamlessly to and from cloud services. With a few lines of code, you can read from and write to Amazon S3 in Parquet/CSV/JSON/ORC, register tables in the AWS Glue Data Catalog, and query with Amazon Athena directly into pandas. The library abstracts efficient patterns like partitioning, compression, and vectorized I/O so you get performant data lake operations without hand-rolling boilerplate. It also supports Redshift, OpenSearch, and other services, enabling ETL tasks that blend SQL engines and Python transformations. Operational helpers handle IAM, sessions, and concurrency while exposing knobs for encryption, versioning, and catalog consistency. The result is a productive workflow that keeps your analytics in Python while leveraging AWS-native storage and query engines at scale. -
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AWS Step Functions Data Science SDK
For building machine learning (ML) workflows and pipelines on AWS
The AWS Step Functions Data Science SDK is an open-source library that allows data scientists to easily create workflows that process and publish machine learning models using Amazon SageMaker and AWS Step Functions. You can create machine learning workflows in Python that orchestrate AWS infrastructure at scale, without having to provision and integrate the AWS services separately. The best way to quickly review how the AWS Step Functions Data Science SDK works is to review the related example notebooks. These notebooks provide code and descriptions for creating and running workflows in AWS Step Functions Using the AWS Step Functions Data Science SDK. In Amazon SageMaker, example Jupyter notebooks are available in the example notebooks portion of a notebook instance. To run the AWS Step Functions Data Science SDK example notebooks locally, download the sample notebooks and open them in a working Jupyter instance. -
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Amazon SageMaker Examples
Jupyter notebooks that demonstrate how to build models using SageMaker
Welcome to Amazon SageMaker. This projects highlights example Jupyter notebooks for a variety of machine learning use cases that you can run in SageMaker. If you’re new to SageMaker we recommend starting with more feature-rich SageMaker Studio. It uses the familiar JupyterLab interface and has seamless integration with a variety of deep learning and data science environments and scalable compute resources for training, inference, and other ML operations. Studio offers teams and companies easy on-boarding for their team members, freeing them up from complex systems admin and security processes. Administrators control data access and resource provisioning for their users. Notebook Instances are another option. They have the familiar Jupyter and JuypterLab interfaces that work well for single users, or small teams where users are also administrators. Advanced users also use SageMaker solely with the AWS CLI and Python scripts using boto3 and/or the SageMaker Python SDK. -
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Awesome Fraud Detection Research Papers
A curated list of data mining papers about fraud detection
A curated list of data mining papers about fraud detection from several conferences. -
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Cookiecutter Data Science
Project structure for doing and sharing data science work
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. When we think about data analysis, we often think just about the resulting reports, insights, or visualizations. While these end products are generally the main event, it's easy to focus on making the products look nice and ignore the quality of the code that generates them. Because these end products are created programmatically, code quality is still important! And we're not talking about bikeshedding the indentation aesthetics or pedantic formatting standards, ultimately, data science code quality is about correctness and reproducibility. It's no secret that good analyses are often the result of very scattershot and serendipitous explorations. Tentative experiments and rapidly testing approaches that might not work out are all part of the process for getting to the good stuff, and there is no magic bullet to turn data exploration into a simple, linear progression. -
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DEPRECATED - KVFinder
Cavity Detection PyMOL plugin
The KVFinder software, originally published in 2014, is deprecated. We published more recent software: parKVFinder and pyKVFinder. [parKVFinder] A Linux/macOS version is available in this GitHub repository, https://github.com/LBC-LNBio/parKVFinder, while a Windows version is in this GitHub repository, https://github.com/LBC-LNBio/parKVFinder-win. Please read and cite the original paper ParKVFinder: A thread-level parallel approach in biomolecular cavity detection (10.1016/j.softx.2020.100606). [pyKVFinder] pyKVFinder is available in this Python Package Index (PyPI) repository, https://pypi.org/project/pyKVFinder and this GitHub repository, https://github.com/LBC-LNBio/pyKVFinder. Please read and cite the original paper pyKVFinder: an efficient and integrable Python package for biomolecular cavity detection and characterization in data science (10.1186/s12859-021-04519-4). -
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Dask
Parallel computing with task scheduling
Dask is a Python library for parallel and distributed computing, designed to scale analytics workloads from single machines to large clusters. It integrates with familiar tools like NumPy, Pandas, and scikit-learn while enabling execution across cores or nodes with minimal code changes. Dask excels at handling large datasets that don’t fit into memory and is widely used in data science, machine learning, and big data pipelines. -
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Data Science at the Command Line
Data science at the command line
Command Line by Jeroen Janssens, published by O’Reilly Media in October 2021. Obtain, scrub, explore, and model data with Unix Power Tools. This repository contains the full text, data, and scripts used in the second edition of the book Data Science at the Command Line by Jeroen Janssens. This thoroughly revised guide demonstrates how the flexibility of the command line can help you become a more efficient and productive data scientist. You’ll learn how to combine small yet powerful command-line tools to quickly obtain, scrub, explore, and model your data. To get you started, author Jeroen Janssens provides a Docker image packed with over 100 Unix power tools, useful whether you work with Windows, macOS, or Linux. You’ll quickly discover why the command line is an agile, scalable, and extensible technology. Even if you’re comfortable processing data with Python or R, you’ll learn how to greatly improve your data science workflow by leveraging the command line’s power.
