Open Source Linux Data Science Tools
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Data Science Tools for Linux
View 14 business solutionsBrowse free open source Data Science tools and projects for Linux below. Use the toggles on the left to filter open source Data Science tools by OS, license, language, programming language, and project status.
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ggplot2
An implementation of the Grammar of Graphics in R
ggplot2 is a system written in R for declaratively creating graphics. It is based on The Grammar of Graphics, which focuses on following a layered approach to describe and construct visualizations or graphics in a structured manner. With ggplot2 you simply provide the data, tell ggplot2 how to map variables to aesthetics, what graphical primitives to use, and it will take care of the rest. ggplot2 is over 10 years old and is used by hundreds of thousands of people all over the world for plotting. In most cases using ggplot2 starts with supplying a dataset and aesthetic mapping (with aes()); adding on layers (like geom_point() or geom_histogram()), scales (like scale_colour_brewer()), and faceting specifications (like facet_wrap()); and finally, coordinating systems. ggplot2 has a rich ecosystem of community-maintained extensions for those looking for more innovation. ggplot2 is a part of the tidyverse, an ecosystem of R packages designed for data science. -
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Quadratic
Data science spreadsheet with Python & SQL
Quadratic enables your team to work together on data analysis to deliver better results, faster. You already know how to use a spreadsheet, but you’ve never had this much power before. Quadratic is a Web-based spreadsheet application that runs in the browser and as a native app (via Electron). Our goal is to build a spreadsheet that enables you to pull your data from its source (SaaS, Database, CSV, API, etc) and then work with that data using the most popular data science tools today (Python, Pandas, SQL, JS, Excel Formulas, etc). Quadratic has no environment to configure. The grid runs entirely in the browser with no backend service. This makes our grids completely portable and very easy to share. Quadratic has Python library support built-in. Bring the latest open-source tools directly to your spreadsheet. Quickly write code and see the output in full detail. No more squinting into a tiny terminal to see your data output. -
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Milvus
Vector database for scalable similarity search and AI applications
Milvus is an open-source vector database built to power embedding similarity search and AI applications. Milvus makes unstructured data search more accessible, and provides a consistent user experience regardless of the deployment environment. Milvus 2.0 is a cloud-native vector database with storage and computation separated by design. All components in this refactored version of Milvus are stateless to enhance elasticity and flexibility. Average latency measured in milliseconds on trillion vector datasets. Rich APIs designed for data science workflows. Consistent user experience across laptop, local cluster, and cloud. Embed real-time search and analytics into virtually any application. Milvus’ built-in replication and failover/failback features ensure data and applications can maintain business continuity in the event of a disruption. Component-level scalability makes it possible to scale up and down on demand. -
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NannyML
Detecting silent model failure. NannyML estimates performance
NannyML is an open-source python library that allows you to estimate post-deployment model performance (without access to targets), detect data drift, and intelligently link data drift alerts back to changes in model performance. Built for data scientists, NannyML has an easy-to-use interface, and interactive visualizations, is completely model-agnostic, and currently supports all tabular classification use cases. NannyML closes the loop with performance monitoring and post deployment data science, empowering data scientist to quickly understand and automatically detect silent model failure. By using NannyML, data scientists can finally maintain complete visibility and trust in their deployed machine learning models. When the actual outcome of your deployed prediction models is delayed, or even when post-deployment target labels are completely absent, you can use NannyML's CBPE-algorithm to estimate model performance. -
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xsv
A fast CSV command line toolkit written in Rust
xsv is a command line program for indexing, slicing, analyzing, splitting and joining CSV files. Commands should be simple, fast and composable. Simple tasks should be easy. Performance trade offs should be exposed in the CLI interface. Composition should not come at the expense of performance. Let's say you're playing with some of the data from the Data Science Toolkit, which contains several CSV files. Maybe you're interested in the population counts of each city in the world. So grab the data and start examining it. The next thing you might want to do is get an overview of the kind of data that appears in each column. The stats command will do this for you. The xsv table command takes any CSV data and formats it into aligned columns using elastic tabstops. These commands are instantaneous because they run in time and memory proportional to the size of the slice (which means they will scale to arbitrarily large CSV data). -
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Metaflow
A framework for real-life data science
Metaflow is a human-friendly Python library that helps scientists and engineers build and manage real-life data science projects. Metaflow was originally developed at Netflix to boost productivity of data scientists who work on a wide variety of projects from classical statistics to state-of-the-art deep learning. -
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NVIDIA Merlin
Library providing end-to-end GPU-accelerated recommender systems
NVIDIA Merlin is an open-source library that accelerates recommender systems on NVIDIA GPUs. The library enables data scientists, machine learning engineers, and researchers to build high-performing recommenders at scale. Merlin includes tools to address common feature engineering, training, and inference challenges. Each stage of the Merlin pipeline is optimized to support hundreds of terabytes of data, which is all accessible through easy-to-use APIs. For more information, see NVIDIA Merlin on the NVIDIA developer website. Transform data (ETL) for preprocessing and engineering features. Accelerate your existing training pipelines in TensorFlow, PyTorch, or FastAI by leveraging optimized, custom-built data loaders. Scale large deep learning recommender models by distributing large embedding tables that exceed available GPU and CPU memory. Deploy data transformations and trained models to production with only a few lines of code. -
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Rodeo
A data science IDE for Python
A data science IDE for Python. RODEO, that is an open-source python IDE and has been brought up by the folks at yhat, is a development environment that is lightweight, intuitive and yet customizable to its very core and also contains all the features mentioned above that were searched for so long. It is just like your very own personal home base for exploration and interpretation of data that aims at Data Scientists and answers the main question, "Is there anything like RStudio for Python?" Rodeo makes it very easy for its users to explore what is created by them and also alongside allows the users to Inspect, interact, compare data frames, plots and even much more. It is an IDE that has been built especially for data science/Machine Learning in Python and you can also very simply think of it as a light weight alternative to the IPython Notebook. -
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SageMaker Training Toolkit
Train machine learning models within Docker containers
Train machine learning models within a Docker container using Amazon SageMaker. Amazon SageMaker is a fully managed service for data science and machine learning (ML) workflows. You can use Amazon SageMaker to simplify the process of building, training, and deploying ML models. To train a model, you can include your training script and dependencies in a Docker container that runs your training code. A container provides an effectively isolated environment, ensuring a consistent runtime and reliable training process. The SageMaker Training Toolkit can be easily added to any Docker container, making it compatible with SageMaker for training models. If you use a prebuilt SageMaker Docker image for training, this library may already be included. Write a training script (eg. train.py). Define a container with a Dockerfile that includes the training script and any dependencies. -
MongoDB Atlas | Run databases anywhereMongoDB Atlas allows you to build and run modern applications across 125+ cloud regions, spanning AWS, Azure, and Google Cloud. Its multi-cloud clusters enable seamless data distribution and automated failover between cloud providers, ensuring high availability and flexibility without added complexity.
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Synapse Machine Learning
Simple and distributed Machine Learning
SynapseML (previously MMLSpark) is an open source library to simplify the creation of scalable machine learning pipelines. SynapseML builds on Apache Spark and SparkML to enable new kinds of machine learning, analytics, and model deployment workflows. SynapseML adds many deep learning and data science tools to the Spark ecosystem, including seamless integration of Spark Machine Learning pipelines with the Open Neural Network Exchange (ONNX), LightGBM, The Cognitive Services, Vowpal Wabbit, and OpenCV. These tools enable powerful and highly-scalable predictive and analytical models for a variety of data sources. SynapseML also brings new networking capabilities to the Spark Ecosystem. With the HTTP on Spark project, users can embed any web service into their SparkML models. For production-grade deployment, the Spark Serving project enables high throughput, sub-millisecond latency web services, backed by your Spark cluster. -
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ClearML
Streamline your ML workflow
ClearML is an open source platform that automates and simplifies developing and managing machine learning solutions for thousands of data science teams all over the world. It is designed as an end-to-end MLOps suite allowing you to focus on developing your ML code & automation, while ClearML ensures your work is reproducible and scalable. The ClearML Python Package for integrating ClearML into your existing scripts by adding just two lines of code, and optionally extending your experiments and other workflows with ClearML powerful and versatile set of classes and methods. The ClearML Server storing experiment, model, and workflow data, and supports the Web UI experiment manager, and ML-Ops automation for reproducibility and tuning. It is available as a hosted service and open source for you to deploy your own ClearML Server. The ClearML Agent for ML-Ops orchestration, experiment and workflow reproducibility, and scalability. -
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Great Expectations
Always know what to expect from your data
Great Expectations helps data teams eliminate pipeline debt, through data testing, documentation, and profiling. Software developers have long known that testing and documentation are essential for managing complex codebases. Great Expectations brings the same confidence, integrity, and acceleration to data science and data engineering teams. Expectations are assertions for data. They are the workhorse abstraction in Great Expectations, covering all kinds of common data issues. Expectations are a great start, but it takes more to get to production-ready data validation. Where are Expectations stored? How do they get updated? How do you securely connect to production data systems? How do you notify team members and triage when data validation fails? Great Expectations supports all of these use cases out of the box. Instead of building these components for yourself over weeks or months, you will be able to add production-ready validation to your pipeline in a day. -
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Cookiecutter Data Science
Project structure for doing and sharing data science work
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. When we think about data analysis, we often think just about the resulting reports, insights, or visualizations. While these end products are generally the main event, it's easy to focus on making the products look nice and ignore the quality of the code that generates them. Because these end products are created programmatically, code quality is still important! And we're not talking about bikeshedding the indentation aesthetics or pedantic formatting standards, ultimately, data science code quality is about correctness and reproducibility. It's no secret that good analyses are often the result of very scattershot and serendipitous explorations. Tentative experiments and rapidly testing approaches that might not work out are all part of the process for getting to the good stuff, and there is no magic bullet to turn data exploration into a simple, linear progression. -
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Nuclio
High-Performance Serverless event and data processing platform
Nuclio is an open source and managed serverless platform used to minimize development and maintenance overhead and automate the deployment of data-science-based applications. Real-time performance running up to 400,000 function invocations per second. Portable across low laptops, edge, on-prem and multi-cloud deployments. The first serverless platform supporting GPUs for optimized utilization and sharing. Automated deployment to production in a few clicks from Jupyter notebook. Deploy one of the example serverless functions or write your own. The dashboard, when running outside an orchestration platform (e.g. Kubernetes or Swarm), will simply be deployed to the local docker daemon. The Getting Started With Nuclio On Kubernetes guide has a complete step-by-step guide to using Nuclio serverless functions over Kubernetes. -
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gophernotes
The Go kernel for Jupyter notebooks and nteract
gophernotes is a Go kernel for Jupyter notebooks and nteract. It lets you use Go interactively in a browser-based notebook or desktop app. Use gophernotes to create and share documents that contain live Go code, equations, visualizations and explanatory text. These notebooks, with the live Go code, can then be shared with others via email, Dropbox, GitHub and the Jupyter Notebook Viewer. Go forth and do data science, or anything else interesting, with Go notebooks! This project utilizes a Go interpreter called gomacro under the hood to evaluate Go code interactively. The gophernotes logo was designed by the brilliant Marcus Olsson and was inspired by Renee French's original Go Gopher design. If you have the JUPYTER_PATH environmental variable set or if you are using an older version of Jupyter, you may need to copy this kernel config to another directory. -
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marimo
A reactive notebook for Python
marimo is an open-source reactive notebook for Python, reproducible, git-friendly, executable as a script, and shareable as an app. marimo notebooks are reproducible, extremely interactive, designed for collaboration (git-friendly!), deployable as scripts or apps, and fit for modern Pythonista. Run one cell and marimo reacts by automatically running affected cells, eliminating the error-prone chore of managing the notebook state. marimo's reactive UI elements, like data frame GUIs and plots, make working with data feel refreshingly fast, futuristic, and intuitive. Version with git, run as Python scripts, import symbols from a notebook into other notebooks or Python files, and lint or format with your favorite tools. You'll always be able to reproduce your collaborators' results. Notebooks are executed in a deterministic order, with no hidden state, delete a cell and marimo deletes its variables while updating affected cells. -
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DearPyGui
Graphical User Interface Toolkit for Python with minimal dependencies
Dear PyGui is an easy-to-use, dynamic, GPU-Accelerated, cross-platform graphical user interface toolkit(GUI) for Python. It is “built with” Dear ImGui. Features include traditional GUI elements such as buttons, radio buttons, menus, and various methods to create a functional layout. Additionally, DPG has an incredible assortment of dynamic plots, tables, drawings, debuggers, and multiple resource viewers. DPG is well suited for creating simple user interfaces as well as developing complex and demanding graphical interfaces. DPG offers a solid framework for developing scientific, engineering, gaming, data science and other applications that require fast and interactive interfaces. The Tutorials will provide a great overview and links to each topic in the API Reference for more detailed reading. Complete theme and style control. GPU-based rendering and efficient C/C++ code. -
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tsfresh
Automatic extraction of relevant features from time series
tsfresh is a python package. It automatically calculates a large number of time series characteristics, the so called features. tsfresh is used to to extract characteristics from time series. Without tsfresh, you would have to calculate all characteristics by hand. With tsfresh this process is automated and all your features can be calculated automatically. Further tsfresh is compatible with pythons pandas and scikit-learn APIs, two important packages for Data Science endeavours in python. The extracted features can be used to describe or cluster time series based on the extracted characteristics. Further, they can be used to build models that perform classification/regression tasks on the time series. Often the features give new insights into time series and their dynamics. -
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Dask
Parallel computing with task scheduling
Dask is a Python library for parallel and distributed computing, designed to scale analytics workloads from single machines to large clusters. It integrates with familiar tools like NumPy, Pandas, and scikit-learn while enabling execution across cores or nodes with minimal code changes. Dask excels at handling large datasets that don’t fit into memory and is widely used in data science, machine learning, and big data pipelines. -
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PySyft
Data science on data without acquiring a copy
Most software libraries let you compute over the information you own and see inside of machines you control. However, this means that you cannot compute on information without first obtaining (at least partial) ownership of that information. It also means that you cannot compute using machines without first obtaining control over those machines. This is very limiting to human collaboration and systematically drives the centralization of data, because you cannot work with a bunch of data without first putting it all in one (central) place. The Syft ecosystem seeks to change this system, allowing you to write software which can compute over information you do not own on machines you do not have (total) control over. This not only includes servers in the cloud, but also personal desktops, laptops, mobile phones, websites, and edge devices. Wherever your data wants to live in your ownership, the Syft ecosystem exists to help keep it there while allowing it to be used privately. -
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cuDF
GPU DataFrame Library
Built based on the Apache Arrow columnar memory format, cuDF is a GPU DataFrame library for loading, joining, aggregating, filtering, and otherwise manipulating data. cuDF provides a pandas-like API that will be familiar to data engineers & data scientists, so they can use it to easily accelerate their workflows without going into the details of CUDA programming. For additional examples, browse our complete API documentation, or check out our more detailed notebooks. cuDF can be installed with conda (miniconda, or the full Anaconda distribution) from the rapidsai channel. cuDF is supported only on Linux, and with Python versions 3.7 and later. The RAPIDS suite of open-source software libraries aims to enable the execution of end-to-end data science and analytics pipelines entirely on GPUs. It relies on NVIDIA® CUDA® primitives for low-level compute optimization but exposing that GPU parallelism and high-bandwidth memory speed through user-friendly Python interfaces. -
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Recommenders
Best practices on recommendation systems
The Recommenders repository provides examples and best practices for building recommendation systems, provided as Jupyter notebooks. The module reco_utils contains functions to simplify common tasks used when developing and evaluating recommender systems. Several utilities are provided in reco_utils to support common tasks such as loading datasets in the format expected by different algorithms, evaluating model outputs, and splitting training/test data. Implementations of several state-of-the-art algorithms are included for self-study and customization in your own applications. Please see the setup guide for more details on setting up your machine locally, on a data science virtual machine (DSVM) or on Azure Databricks. Independent or incubating algorithms and utilities are candidates for the contrib folder. This will house contributions which may not easily fit into the core repository or need time to refactor or mature the code and add necessary tests. -
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XGBoost
Scalable and Flexible Gradient Boosting
XGBoost is an optimized distributed gradient boosting library, designed to be scalable, flexible, portable and highly efficient. It supports regression, classification, ranking and user defined objectives, and runs on all major operating systems and cloud platforms. XGBoost works by implementing machine learning algorithms under the Gradient Boosting framework. It also offers parallel tree boosting (GBDT, GBRT or GBM) that can quickly and accurately solve many data science problems. XGBoost can be used for Python, Java, Scala, R, C++ and more. It can run on a single machine, Hadoop, Spark, Dask, Flink and most other distributed environments, and is capable of solving problems beyond billions of examples. -
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DAT Linux
The data science OS
DAT Linux is a Linux distribution for data science. It brings together all your favourite open-source data science tools and apps into a ready-to-run desktop environment. https://datlinux.com It's based on Lubuntu, so it’s easy to install and use. The custom DAT Linux Control Panel provides a centralised one-stop-shop for running and managing dozens of data science programs. DAT Linux is perfect for students, professionals, academics, or anyone interested in data science who doesn’t want to spend endless hours downloading, installing, configuring, and maintaining applications from a range of sources, each with different technical requirements and set-up challenges. -
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ML workspace
All-in-one web-based IDE specialized for machine learning
All-in-one web-based development environment for machine learning. The ML workspace is an all-in-one web-based IDE specialized for machine learning and data science. It is simple to deploy and gets you started within minutes to productively built ML solutions on your own machines. This workspace is the ultimate tool for developers preloaded with a variety of popular data science libraries (e.g., Tensorflow, PyTorch, Keras, Sklearn) and dev tools (e.g., Jupyter, VS Code, Tensorboard) perfectly configured, optimized, and integrated. Usable as remote kernel (Jupyter) or remote machine (VS Code) via SSH. Easy to deploy on Mac, Linux, and Windows via Docker. Jupyter, JupyterLab, and Visual Studio Code web-based IDEs.By default, the workspace container has no resource constraints and can use as much of a given resource as the host’s kernel scheduler allows.
