Search Results for "operator"

...If your Airflow version is 2.1.0, and you want to install this provider version, first upgrade Airflow to at least version 2.1.0. Otherwise, your Airflow package version will be upgraded automatically, and you will have to manually run airflow upgrade db to complete the migration. This operator currently works with the Great Expectations V3 Batch Request API only. If you would like to use the operator in conjunction with the V2 Batch Kwargs API, you must use a version below 0.1.0. This operator uses Great Expectations Checkpoints instead of the former ValidationOperators. Because of the above, this operator requires Great Expectations >=v0.13.9, which is pinned in the requirements.txt starting with release 0.0.5.

gusty allows you to control your Airflow DAGs, Task Groups, and Tasks with greater ease. gusty manages collections of tasks, represented as any number of YAML, Python, SQL, Jupyter Notebook, or R Markdown files. A directory of task files is instantly rendered into a DAG by passing a file path to gusty's create_dag function. gusty also manages dependencies (within one DAG) and external dependencies (dependencies on tasks in other DAGs) for each task file you define. All you have to do is...

Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular pipeline, called iMir, integrating multiple open source modules and resource in an automated workflow, devising different statistical approaches to analyze data rigorously. iMir comprises also a Graphical User Interface (GUI), so that the pipeline is particularly suited for biologist and early stage bioinformaticians and produces both graphics and text outputs.