Search Results for "open source assembly software source code"
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Showing 190 open source projects for "open source assembly software source code"
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pydna
Clone with Python! Data structures for double stranded DNA
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning. Planning genetic constructs with many parts and assembly steps, such as recombinant metabolic pathways, are often difficult to properly document as is evident from the poor state of documentation in the scientific literature. The pydna python package provide a human-readable formal description of cloning and genetic assembly strategies in Python which... -
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Dash
Build beautiful web-based analytic apps, no JavaScript required
Dash is a Python framework for building beautiful analytical web applications without any JavaScript. Built on top of Plotly.js, React and Flask, Dash easily achieves what an entire team of designers and engineers normally would. It ties modern UI controls and displays such as dropdown menus, sliders and graphs directly to your analytical Python code, and creates exceptional, interactive analytics apps. Dash apps are very lightweight, requiring only a limited number of lines of Python or... -
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Positron
Positron, a next-generation data science IDE
Positron is a next-generation integrated development environment (IDE) created by Posit PBC (formerly RStudio Inc) specifically tailored for data science workflows in Python, R, and multi-language ecosystems. It aims to unify exploratory data analysis, production code, and data-app authoring in a single environment so that data scientists move from “question → insight → application” without switching tools. Built on the open-source Code-OSS foundation, Positron provides a familiar coding experience along with specialized panes and tooling for variable inspection, data-frame viewing, plotting previews, and interactive consoles designed for analytical work. ... -
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Matplotlib
matplotlib: plotting with Python
Matplotlib is a comprehensive library for creating static, animated, and interactive visualizations in Python. Matplotlib makes easy things easy and hard things possible. Matplotlib ships with several add-on toolkits, including 3D plotting with mplot3d, axes helpers in axes_grid1 and axis helpers in axisartist. A large number of third party packages extend and build on Matplotlib functionality, including several higher-level plotting interfaces (seaborn, HoloViews, ggplot, ...), and a... -
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CKAN
CKAN is an open-source DMS for powering data hubs
CKAN is the world’s leading open-source data portal platform. CKAN makes it easy to publish, share and work with data. It's a data management system that provides a powerful platform for cataloging, storing and accessing datasets with a rich front-end, full API (for both data and catalog), visualization tools and more.CKAN is used by national and regional government organizations throughout the European Union, the Americas, Asia, and Oceania to power a variety of official and community data portals. ... -
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miepython
Mie scattering of light by perfect spheres
miepython is a pure Python module to calculate light scattering for non-absorbing, partially-absorbing, or perfectly-conducting spheres. Mie theory is used, following the procedure described by Wiscombe. This code has been validated against his results. This code provides functions for calculating the extinction efficiency, scattering efficiency, backscattering, and scattering asymmetry. Moreover, a set of angles can be given to calculate the scattering for a sphere at each of those angles. -
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Covalent workflow
Pythonic tool for running machine-learning/high performance workflows
Covalent is a Pythonic workflow tool for computational scientists, AI/ML software engineers, and anyone who needs to run experiments on limited or expensive computing resources including quantum computers, HPC clusters, GPU arrays, and cloud services. Covalent enables a researcher to run computation tasks on an advanced hardware platform – such as a quantum computer or serverless HPC cluster – using a single line of code. Covalent overcomes computational and operational challenges inherent... -
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Mercury
Convert Python notebook to web app and share with non-technical users
Turn Python notebooks to web applications with open-source Mercury framework. Hide code and add interactive widgets. Non-technical users can tweak widgets and execute notebook with new parameters. The core of Mercury is Open Source under AGPLv3. We provide Mercury Pro with additional features, dedicated support and friendly commercial license. Mercury is a perfect tool to convert Python notebook to interactive web application and share with non-programmers. ... -
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Mage.ai
Build, run, and manage data pipelines for integrating data
Open-source data pipeline tool for transforming and integrating data. The modern replacement for Airflow. Effortlessly integrate and synchronize data from 3rd party sources. Build real-time and batch pipelines to transform data using Python, SQL, and R. Run, monitor, and orchestrate thousands of pipelines without losing sleep. Have you met anyone who said they loved developing in Airflow? -
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Modin
Scale your Pandas workflows by changing a single line of code
Scale your pandas workflow by changing a single line of code. Modin uses Ray, Dask or Unidist to provide an effortless way to speed up your pandas notebooks, scripts, and libraries. Unlike other distributed DataFrame libraries, Modin provides seamless integration and compatibility with existing pandas code. Even using the DataFrame constructor is identical. It is not necessary to know in advance the available hardware resources in order to use Modin. Additionally, it is not necessary to... -
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SDGym
Benchmarking synthetic data generation methods
The Synthetic Data Gym (SDGym) is a benchmarking framework for modeling and generating synthetic data. Measure performance and memory usage across different synthetic data modeling techniques – classical statistics, deep learning and more! The SDGym library integrates with the Synthetic Data Vault ecosystem. You can use any of its synthesizers, datasets or metrics for benchmarking. You also customize the process to include your own work. Select any of the publicly available datasets from the... -
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ClearML
Streamline your ML workflow
ClearML is an open source platform that automates and simplifies developing and managing machine learning solutions for thousands of data science teams all over the world. It is designed as an end-to-end MLOps suite allowing you to focus on developing your ML code & automation, while ClearML ensures your work is reproducible and scalable. The ClearML Python Package for integrating ClearML into your existing scripts by adding just two lines of code, and optionally extending your experiments and other workflows with ClearML powerful and versatile set of classes and methods. ... -
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Dagster
An orchestration platform for the development, production
Dagster is an orchestration platform for the development, production, and observation of data assets. Dagster as a productivity platform: With Dagster, you can focus on running tasks, or you can identify the key assets you need to create using a declarative approach. Embrace CI/CD best practices from the get-go: build reusable components, spot data quality issues, and flag bugs early. Dagster as a robust orchestration engine: Put your pipelines into production with a robust... -
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SageMaker Training Toolkit
Train machine learning models within Docker containers
Train machine learning models within a Docker container using Amazon SageMaker. Amazon SageMaker is a fully managed service for data science and machine learning (ML) workflows. You can use Amazon SageMaker to simplify the process of building, training, and deploying ML models. To train a model, you can include your training script and dependencies in a Docker container that runs your training code. A container provides an effectively isolated environment, ensuring a consistent runtime and... -
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geemap
A Python package for interactive geospaital analysis and visualization
A Python package for interactive geospatial analysis and visualization with Google Earth Engine. Geemap is a Python package for geospatial analysis and visualization with Google Earth Engine (GEE), which is a cloud computing platform with a multi-petabyte catalog of satellite imagery and geospatial datasets. During the past few years, GEE has become very popular in the geospatial community and it has empowered numerous environmental applications at local, regional, and global scales. GEE... -
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Cookiecutter Data Science
Project structure for doing and sharing data science work
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. When we think about data analysis, we often think just about the resulting reports, insights, or visualizations. While these end products are generally the main event, it's easy to focus on making the products look nice and ignore the quality of the code that generates them. Because these end products are created programmatically, code quality is still important! And we're not talking... -
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Dask
Parallel computing with task scheduling
Dask is a Python library for parallel and distributed computing, designed to scale analytics workloads from single machines to large clusters. It integrates with familiar tools like NumPy, Pandas, and scikit-learn while enabling execution across cores or nodes with minimal code changes. Dask excels at handling large datasets that don’t fit into memory and is widely used in data science, machine learning, and big data pipelines. -
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Great Expectations
Always know what to expect from your data
Great Expectations helps data teams eliminate pipeline debt, through data testing, documentation, and profiling. Software developers have long known that testing and documentation are essential for managing complex codebases. Great Expectations brings the same confidence, integrity, and acceleration to data science and data engineering teams. Expectations are assertions for data. They are the workhorse abstraction in Great Expectations, covering all kinds of common data issues. Expectations... -
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JS Analyzer
Burp Suite extension for JavaScript static analysis
JS Analyzer is a powerful static analysis tool implemented as a Burp Suite extension that helps security researchers and web developers automatically uncover important artifacts in JavaScript files during web application testing. It parses JavaScript responses intercepted by Burp Suite and intelligently extracts API endpoints, full URLs (including cloud storage links), secrets like API keys or tokens, and email addresses while filtering out noise from irrelevant code patterns. The extension... -
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Union Pandera
Light-weight, flexible, expressive statistical data testing library
The open-source framework for precision data testing for data scientists and ML engineers. Pandera provides a simple, flexible, and extensible data-testing framework for validating not only your data but also the functions that produce them. A simple, zero-configuration data testing framework for data scientists and ML engineers seeking correctness. Access a comprehensive suite of built-in tests, or easily create your own validation rules for your specific use cases. Validate the functions... -
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Sweetviz
Visualize and compare datasets, target values and associations
Sweetviz is an open-source Python library that generates beautiful, high-density visualizations to kickstart EDA (Exploratory Data Analysis) with just two lines of code. Output is a fully self-contained HTML application. The system is built around quickly visualizing target values and comparing datasets. Its goal is to help quick analysis of target characteristics, training vs testing data, and other such data characterization tasks. -
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Gretel Synthetics
Synthetic data generators for structured and unstructured text
Unlock unlimited possibilities with synthetic data. Share, create, and augment data with cutting-edge generative AI. Generate unlimited data in minutes with synthetic data delivered as-a-service. Synthesize data that are as good or better than your original dataset, and maintain relationships and statistical insights. Customize privacy settings so that data is always safe while remaining useful for downstream workflows. Ensure data accuracy and privacy confidently with expert-grade reports.... -
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marimo
A reactive notebook for Python
marimo is an open-source reactive notebook for Python, reproducible, git-friendly, executable as a script, and shareable as an app. marimo notebooks are reproducible, extremely interactive, designed for collaboration (git-friendly!), deployable as scripts or apps, and fit for modern Pythonista. Run one cell and marimo reacts by automatically running affected cells, eliminating the error-prone chore of managing the notebook state. marimo's reactive UI elements, like data frame GUIs and plots,... -
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CleanVision
Automatically find issues in image datasets
CleanVision automatically detects potential issues in image datasets like images that are: blurry, under/over-exposed, (near) duplicates, etc. This data-centric AI package is a quick first step for any computer vision project to find problems in the dataset, which you want to address before applying machine learning. CleanVision is super simple -- run the same couple lines of Python code to audit any image dataset! The quality of machine learning models hinges on the quality of the data used... -
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Luigi
Python module that helps you build complex pipelines of batch jobs
Luigi is a Python (3.6, 3.7, 3.8, 3.9 tested) package that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization, handling failures, command line integration, and much more. The purpose of Luigi is to address all the plumbing typically associated with long-running batch processes. You want to chain many tasks, automate them, and failures will happen. These tasks can be anything, but are typically long running things like Hadoop...
