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File-Spector is a small, fast and easy to use binary file analyzer and Inspector.
It allows the users to format a complete binary file structure and then use it to read any binary file that matches the specified format.
BLIX is a cross-platform set of Python extension modules and Python scripts for Blender (www.blender.org). These scripts add camera calibration, 3D reconstruction and rigid body orientation to Blender.
Viewmol is a graphical front end for computational chemistry programs. It is able to graphically aid in the generation of molecular structures for computations and to visualize their results.
Computer Controlled Optical Microscopy is a package to enable camera equipped microscopes to generate multi-modal time-lapse image sequences
of 3D volumes. This is achieved by periodically changing optical settings, xyz positions and acquiring images.
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A GUI built using Python 2.3+, wxPython and PyOpenGL for the mathematical modeling and visualization of landscape and streamflow systems. This visualization tool uses the Channel-Hillslope Integrated Landscape Development (CHILD) model as its backend.
Network Visualization is a mature part of computer science that is enjoying a good deal of growth, partially fueled by Bioinformatics. Network is a synonym for Graph, and both refer to a collection of nodes and edges.
Matlab/Octave to Python conversion facility. The tool will take existing scripts
and convert them to Python. Also includes Python bindings to Octave and
a small runtime support library. Built on top of Numeric Python extensions.
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Geomatrix, collection of C/C++ libraries to be used for symbolic description of n-dimensional geometric models. Operates internally with a representation that constructs complex objects based on primitives, allowing loss-less modifcation of models.
MatPy is a Python package for numerical linear algebra and plotting with a
MatLab-like interface. It currently consists of wrappers around Numeric and
Gnuplot packages, but eventually may be implemented directly in C/C++, or as
interface to Octave.
Open Worlds VR is a general, visual and interactive simulation platform, designed to support thousands of independent actors (objects). It also implements a strong peer-to-peer networking algorithm to allow multi-computer processing of a single large simu
This is a collection of different little tools written in MATLAB, JAVA, Python. They all have to to do with Imaging & Microscopy for life science research and related topics or problems. Some of them are meant to be used with ImageJ and MicroManager.
The co-simulation adapation platform serves as programming framework and middleware to enable coupling of distributed, heterogeneous numerical models. The framework facilitates the adaptation and integration of new sub-models into a common simulation platform.
Cellicone is a project to develop an artificial life organism with the necessary components to make it comparable to biological life as we know it. This includes components ranging from proteins to cells to organs to limbs, and many steps between.
Embeds a python interpreter in the OpenDX (http://www.opendx.org/) visualization system. This allows the user to quickly write their own custom modules using a Python program.
ProfileLogger is a program to help geologists to log and automatically draw the content of sedimentologic/stratigraphic column. Data can be imported from CSV files and exported to PDF and SVG files.
The 3D Slicer is freely available, open-source software for visualization, registration, segmentation, and quantification of medical image data. Follow the link for more info: http://slicer.org
PixLab is a peculiar raster-based graphic editor giving one more additional drawing aspect to an artist. Not only traditional elements of painting, such as color and shape, but also artist's brush dynamics is fixed and displayed.