Open Source Python Data Management Systems - Page 16

Pyclamp is Python package used to extract and analyse electrophysiological data. A graphical user interface has been developed to allow a user to run the pack- age without requiring any knowledge of Python code. Presently, Pyclamp is designed to perform very specific forms of analysis on evoked synaptic responses: Data analysis (under development) : This is a highly user-interactive en-vironment that can be used to discriminate synaptic events, obtain various measures of their kinetics and size, and output the results. Quantal analysis : This part of the package performs simple variance-mean analysis and Bayesian quantal analysis to estimate the quantal sizea dn number of release sites among other measures.

Pyllar is a 3D plotting library for the Python programming language. It uses the Visualization Toolkit (VTK) and PyNum library provide high quality 3D plots for science and engineering.

Pyphant is a framework for scientific data analysis. It features a flexible plugin architecture allowing for the application in many different fields. For the analysis a graph of processing steps is constructed, that can be applied via the cli as well.

O Pytente é uma solução avançada para automatizar o processo de coleta, armazenamento e tratamento de dados bibliográficos de patentes. A ferramenta foi projetada para simplificar a coleta de grandes volumes de dados em repositórios de acesso aberto. O Pytente garante o armazenamento estruturado das informações, além da validação e eliminação de registros duplicados. Dentre as diversas funcionalidades disponibilizadas pela ferramenta, destacam-se a extração personalizada de subconjuntos de dados e a possibilidade de realizar buscas semânticas no conjunto de dados armazenados, sem a necessidade de elaborar expressões lógicas de busca.

The Python Computer Graphics Kit is a collection of Python modules that contain the basic types and functions to be able to create 3D computer graphics images (focusing on Pixar's RenderMan interface).

The main purpose of "python2xlw" is to create an Excel-compatible file which can be sent to users via the web as an excel application. The motivation is mainly to support the display of XY Scatter plots and tabular numerical data(eg engineering data)

A toolkit of Python software useful in a laboratory data acquisition and analysis environment. Includes support for such protocols as VXI-11 (and its extension, LXI), Vernier LabPro (now very old), and National Instruments DSTP (now very old). Also includes data analysis and modelling tidbits. Python3 updates are on the way in the very near future for the biggest packages. the vxi11 package is fully up-to-date, although see the blog post about python 3.13

During acoustic surveys of marine ecosystems, fisheries scientists need to quickly interpret large amounts of echosounder data and decide whether and where to sample for targeted organisms. The Python Open Source Echosounder Toolkit (pyOSET) was designed to facilitate this process by providing near real-time visualization of network data broadcasts from multiple echosounder systems, and to serve as a framework for implementation of algorithms to detect, locate, and identify fish or the seabed. An Alpha release of the software is available under the GNU General Public License, version 2. Many practical aspects of the user interface are still in the planning and development phase. Those who wish to participate in the development of pyOSET are encouraged to subscribe to the Developer's Mailing List. End users who want up to date information on the status of releases should periodically check the project News link above, or subscribe to the RSS feed of that page.

PyOSG is a python wrapper for the OpenSceneGraph. Version number corresponds to the version of OpenSceneGraph that PyOSG should work with (e.g. PyOSG 2.8 should work with OpenSceneGraph 2.8.x). Still in early stages, so email mday299 if any problems!

General plugins for the QGis tool http://www.qgis.org. The plugins will be mostly written in python language. The idea is to contribute to the GIS open source software community.

QME-DEV Workbench (wxScipy) is a data analysis workbench based on Python, SciPy, Numpy and MatPlotLib(PyLab) and uses wxPython for the GUI. It can be used for non-linear analysis with a large set of experimental or generated data. Load/Acquire / Save/ Gr

Quick2dPlot, or q2d for short, is an open source minimalistic plotting program designed for live 2d graphical representation of data streams. The program may be useful for plotting output of different user's application programs, especially in case when the user wants to see a plot or a number of plots during calculations or a data acquisition process. The program is command-driven and uses no widgets. Q2d is written in C, it takes advantage of SDL2 library for plotting. Currently it has been tested under Linux and under Windows via Cygwin.

QuickDicom is an easy to use dicom medical imaging package for Mac OSX, providing QuickLook, Spotlight, Quartz Composer, Window/Level and a dicom file analyzer. Also included is the iiDicom Framework for image/dictionary usage in Objective C and Python.

QuickFlash is a C++-based analysis library for data files generated by the Flash hydrodynamics code. It provides high-performance access to large datasets in low memory situations and other restrictive environments.

Data evaluation tool for the magnetism reflectometer at the spallation neutron source (BL-4A@SNS). Reads raw nexus files (HDF5) of histogrammed or event mode data to create reflectivity curves and 2D Q-maps.

Graphical user interface for gnuplot to create publication quality figure very quickly. It supports templates for fast formatting of graphics, different plot styles, insets, axis and label options. One important feature is storing metadata in png and pdf files that can be used to reload any graph saved with QuickPlot.

Robotic Manipulator Development and Simulation Environment in Python and Blender. IMPORTANT: Development moved to github. http://github.com/ajnsit/r2d3

This C++ lib is used and created to provide easy methods based on ROOT (a CERN data analysis framework). It was developed for use in practical courses but is not limited to. In addition it is ported step by step into Python.

RStatServer is a system for quickly developing and deploying web applications that integrate statistical computations and graphics. It is built using the Zope web application develeopment system and the open-source statistical data analysis environment R

The Recommenders repository provides examples and best practices for building recommendation systems, provided as Jupyter notebooks. The module reco_utils contains functions to simplify common tasks used when developing and evaluating recommender systems. Several utilities are provided in reco_utils to support common tasks such as loading datasets in the format expected by different algorithms, evaluating model outputs, and splitting training/test data. Implementations of several state-of-the-art algorithms are included for self-study and customization in your own applications. Please see the setup guide for more details on setting up your machine locally, on a data science virtual machine (DSVM) or on Azure Databricks. Independent or incubating algorithms and utilities are candidates for the contrib folder. This will house contributions which may not easily fit into the core repository or need time to refactor or mature the code and add necessary tests.

A tool that parses SQL Select statements and generates a diagram. The diagram shows parts of the underlying SQL directly in the diagram. For example x=30 , GROUP BY (year), HAVING MIN(age) > 18. It is easy to see cartesian joins and/or loops.

Reliability Oriented Bioinformatic Networks Visualization

Rocksnake takes localities from geological mapping projects and plots them in 2D, over an optional basemap. Each locality has all the standard geology notebook contents and photos attached to it which can then be viewed from Rocksnake.

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