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Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data. MOIRAI has a graphical interface allowing wet-lab researchers to create, modify and run analysis workflows. ...

Thinkedit is an open source web based content and data management system written in PHP. With large emphasis on databases, and specifically sql ones (mysql). It is highly extensible through simple configuration files. Not actively maintained

Web Geostatistics is an application that allows you to visualize data from various sources in a 3D environment. The main goal is to look nice and to produce simple but effective statistics of any kind of data that has an associated time and location.

Monitors webpages for changes and emails output with differences to subscribers. Permits user accounts and registration. PHP/MYSQL.

PHk is a robust set of PHP tools released under the GPL. Visit our PATCHES area to download anything PHk related, as we have numerous objects.

dbxWebApp www.dbXwebApp.org PHP open-source Content-Management and Data-Management System with DHTML and WYSIWYG Editor & IDE. Database-DataDictionary for every DB. Next-Generation-CMS&DMS. Please visit www.dbXwebAppp.org for more Informations and Downlo

Suite of tools for drawing graphs about social indicators of progress and Web2.0 site for discussing about them. Please, visit the Trac page on SourceForge at http://apps.sourceforge.net/trac/mindgapper/