Search Results for "data structures"
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Showing 86 open source projects for "data structures"
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PDMats.jl
Uniform Interface for positive definite matrices of various structures
Uniform interface for positive definite matrices of various structures. Positive definite matrices are widely used in machine learning and probabilistic modeling, especially in applications related to graph analysis and Gaussian models. It is not uncommon that positive definite matrices used in practice have special structures (e.g. diagonal), which can be exploited to accelerate computation. PDMats.jl supports efficient computation on positive definite matrices of various structures. In... -
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pandas
Fast, flexible and powerful Python data analysis toolkit
pandas is a Python data analysis library that provides high-performance, user friendly data structures and data analysis tools for the Python programming language. It enables you to carry out entire data analysis workflows in Python without having to switch to a more domain specific language. With pandas, performance, productivity and collaboration in doing data analysis in Python can significantly increase. -
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JuliaConnectoR
A functionally oriented interface for calling Julia from R
...Julia functions imported via the JuliaConnectoR can accept and return R variables. It is also possible to pass R functions as arguments in place of Julia functions, which allows callbacks from Julia to R. From a technical perspective, R data structures are serialized with an optimized custom streaming format, sent to a (local) Julia TCP server, and translated to Julia data structures by Julia. The results of function calls are likewise translated back to R. Complex Julia structures can either be used by reference via proxy objects in R or fully translated to R data structures. -
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DataStructures.jl
Julia implementation of Data structures
Julia implementation of Data structures. -
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FModel
Unreal Engine Archives Explorer
FModel is a freeware application designed to explore Unreal Engine games archives, allowing users to delve into the assets and structures of games developed with Unreal Engine. -
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NLPModels.jl
Data Structures for Optimization Models
This package provides general guidelines to represent non-linear programming (NLP) problems in Julia and a standardized API to evaluate the functions and their derivatives. The main objective is to be able to rely on that API when designing optimization solvers in Julia. -
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PowerSystems.jl
Data structures in Julia to enable power systems analysis
The PowerSystems.jl package provides a rigorous data model using Julia structures to enable power systems analysis and modeling. In addition to stand-alone system analysis tools and data model building, the PowerSystems.jl package is used as the foundational data container for the PowerSimulations.jl and PowerSimulationsDynamics.jl packages. PowerSystems.jl supports a limited number of data file formats for parsing. -
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Finch.jl
Sparse tensors in Julia and more
Finch is a cutting-edge Julia-to-Julia compiler specially designed for optimizing loop nests over sparse or structured multidimensional arrays. Finch empowers users to write conventional for loops which are transformed behind-the-scenes into fast sparse code. -
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pydna
Clone with Python! Data structures for double stranded DNA
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning. Planning genetic constructs with many parts and assembly steps, such as recombinant metabolic pathways, are often difficult to properly document as is evident from the poor state of documentation in the scientific literature. -
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collapse
Advanced and Fast Data Transformation in R
collapse is a high-performance R package designed for fast and efficient data transformation, aggregation, reshaping, and statistical computation. Built to offer a more performant alternative to dplyr and data.table, it is particularly well-suited for large datasets and econometric applications. It operates on base R data structures like data frames and vectors and uses highly optimized C++ code under the hood to deliver significant speed improvements. collapse also includes tools for grouped operations, weighted statistics, and time series manipulation, making it a compact yet powerful utility for data scientists and researchers working in R. -
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Functors.jl
Parameterise all the things
Functors.jl provides tools to express a powerful design pattern for dealing with large/ nested structures, as in machine learning and optimization. For large machine learning models, it can be cumbersome or inefficient to work with parameters as one big, flat vector, and structs help manage complexity; but it is also desirable to easily operate over all parameters at once, e.g. for changing precision or applying an optimizer update step. -
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MarketData.jl
Time series market data
The MarketData package provides open-source financial data for research and testing. The data is from Quandl and is free end-of-day stock data. It is public domain without restrictions. The TimeSeries TimeArray data structure is used to store the data, but conversion to other data structures, including DataFrames and AxisArrays, is supported. -
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ggraph
Grammar of Graph Graphics
ggraph adapts the Grammar of Graphics from ggplot2 for network and graph visualizations. It integrates with tidygraph/igraph data structures, providing a wide range of geoms, layouts (e.g. hive plots, circle packing), and layering methods tailored to hierarchical or relational data. -
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brms
brms R package for Bayesian generalized multivariate models using Stan
brms is an R package by Paul Bürkner which provides a high-level interface for fitting Bayesian multilevel (i.e. mixed effects) models, generalized linear / non-linear / multivariate models using Stan as the backend. It allows R users to specify complex Bayesian models using formula syntax similar to lme4 but with far more flexibility (distributions, link functions, hierarchical structure, nonlinear terms, etc.). It supports model diagnostics, posterior predictive checking, model comparison,... -
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CGAL
The Computational Geometry Algorithms Library
...These algorithms are useful in a wide range of applications, including computer aided design, robotics, molecular biology, medical imaging, geographic information systems and more. CGAL features a great range of data structures and algorithms, including Voronoi diagrams, cell complexes and polyhedra, triangulations, arrangements of curves, surface and volume mesh generation, spatial searching, alpha shapes, geometry processing, and many more. The use of these result in beautiful, visually complex and accurate representations. -
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Whirlwind
Ridiculously fast, fully asynchronous, sharded hashmap for Rust
Collection of thread-safe, asynchronous data structures. Whirlwind is a lightweight CSS framework focused on performance and simplicity, offering developers a minimal approach to styling web applications. -
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clusterProfiler
A universal enrichment tool for interpreting omics data
clusterProfiler is an R/Bioconductor package that provides a unified workflow for functional enrichment analysis to interpret high-throughput omics results. It supports both over-representation analysis and gene set enrichment analysis, letting you work with unranked gene lists or ranked statistics from differential pipelines. The package connects to multiple knowledge bases—such as Gene Ontology, KEGG, Reactome, Disease Ontology, MeSH and others—through a consistent interface so you can... -
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reticulate
R Interface to Python
reticulate is an R package from Posit that creates seamless interoperability between R and Python. It lets you call Python modules, classes, and functions from within R, automatically translating between R and Python data structures. Useful for combining Python tooling with R projects, data analysis, and RMarkdown reports. -
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Symfony PropertyInfo
Extracts information about PHP class' properties using metadata
Symfony PropertyInfo is a component that extracts information about the properties of PHP classes, such as their names, types, visibility, and documentation. It is particularly useful in scenarios like serialization, form generation, and validation, where understanding the structure of an object is essential. PropertyInfo can fetch data from PHPDoc annotations, reflection, and type hints, offering flexible integration with Symfony and other systems. -
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Redisson
Valkey & Redis Java client. Real-Time Data Platform
Redisson is a Java client library for Redis that offers distributed data structures, services, and frameworks to build scalable and reliable applications. It simplifies Redis usage by providing in-memory Java objects like maps, sets, locks, queues, and semaphores that are backed by Redis. Redisson supports advanced features like distributed locking, asynchronous APIs, and integrates with frameworks like Spring and Quarkus for reactive and cloud-native development. -
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JLD2
HDF5-compatible file format in pure Julia
JLD2 saves and loads Julia data structures in a format comprising a subset of HDF5, without any dependency on the HDF5 C library. JLD2 is able to read most HDF5 files created by other HDF5 implementations supporting HDF5 File Format Specification Version 3.0 (i.e. libhdf5 1.10 or later) and similarly, those should be able to read the files that JLD2 produces. JLD2 provides read-only support for files created with the JLD package. -
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Neuroglancer
WebGL-based viewer for volumetric data
Neuroglancer is a WebGL-based visualization tool designed for exploring large-scale volumetric and neuroimaging datasets directly in the browser. It allows users to interactively view arbitrary 2D and 3D cross-sections of volumetric data alongside 3D meshes and skeleton models, enabling precise examination of neural structures and biological imaging results. Its multi-pane interface synchronizes multiple orthogonal views with a central 3D viewport, making it ideal for analyzing complex brain imaging data such as connectomics datasets. Neuroglancer operates entirely client-side, fetching data over HTTP in a variety of supported formats including Neuroglancer precomputed, N5, Zarr, and NIfTI, among others. ... -
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JuliaSyntax
A Julia frontend, written in Julia
...It's highly compatible with Julia's older femtoliter-based parser - It parses all of Base, the standard libraries and the General registry. Some minor differences remain where we've decided to fix bugs or strange behaviors in the reference parser. The AST and tree data structures are usable but their APIs will evolve as we try out various use cases. Parsing to the standard Expr AST is always possible and will be stable. The intention is to extend this library over time to cover more of the Julia compiler front end. -
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PyVista
3D plotting and mesh analysis through a streamlined interface
3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK). PyVista is a helper module for the Visualization Toolkit (VTK) that takes a different approach on interfacing with VTK through NumPy and direct array access. This package provides a Pythonic, well-documented interface exposing VTK’s powerful visualization backend to facilitate rapid prototyping, analysis, and visual integration of spatially referenced datasets. This module can be used for... -
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Query.jl
Query almost anything in julia
Query is a package for querying julia data sources. It can filter, project, join and group data from any iterable data source, including all the sources supported in IterableTables.jl. One can for example query any of the following data sources: any array, DataFrames, DataStreams (including CSV, Feather, SQLite, ODBC), DataTables, IndexedTables, TimeSeries, Temporal, TypedTables and DifferentialEquations (any DESolution). The package currently provides working implementations for in-memory...
