Showing 93 open source projects for "oracle-apex-workflow"

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  • 1
    Better SQL in java! Offering a seamless java class mapping and SQL-like domain-specific language implemented for number of commercial and open-source DBMS
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  • 2
    GeOxygene
    GeOxygene aims at providing an open framework which implements OGC/ISO specifications for the development and deployment of geographic (GIS) applications. It is a open source contribution of the COGIT lab. at the IGN (the French National Mapping Agency).
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    Downloads: 0 This Week
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  • 3
    QuickRNASeq

    QuickRNASeq

    A pipeline for large scale RNA-seq data analysis

    ...QuickRNASeq takes advantage of parallel computing resources, a careful selection of previously published algorithms for RNA-seq read mapping, counting and quality control, and a three-stage strategy to build a fully automated workflow. We also implemented built-in functionalities to detect sample swapping or mislabeling in large-scale RNA-seq studies. Our pipeline significantly lifts large-scale RNA-seq data analysis to the next level of automation and visualization. Please take a look at our test run project report and get a taste of its rich interactive visualization features. http://baohongz.github.io/QuickRNASeq QuickRNASeq user guide can be downloaded or is accessible online as well http://baohongz.github.io/QuickRNASeq/guide.html For more on QuickRNASeq, please see our paper http://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-015-2356-9 Enjoy QuickRNASeq
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  • 4

    QuickNGS

    Next-Generation Sequencing workflow system

    QuickNGS is a software for efficient and highly reproducible data analysis for Next-Generation Sequencing.
    Downloads: 0 This Week
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    Gimias

    Gimias

    Graphical Interface for Medical Image Analysis and Simulation

    GIMIAS is a workflow-oriented environment for solving advanced biomedical image computing and individualized simulation problems, which is extensible through the development of problem-specific plug-ins. In addition, GIMIAS provides an open source framework for efficient development of research and clinical software prototypes integrating contributions from the Physiome community while allowing business-friendly technology transfer and commercial product development.
    Downloads: 1 This Week
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  • 6

    SPRITE

    Parallel SNP detection pipeline

    SPRITE is an open-source software package providing a parallel implementation of the Single Nucleotide Polymorphisms (SNP) detection genomic data analysis workflow. It consists of three tools: PRUNE for read alignment, SAMPA for intermediate file processing, and PARSNIP for parallel SNP calling.
    Downloads: 0 This Week
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  • 7
    Data Science Specialization

    Data Science Specialization

    Course materials for the Data Science Specialization on Coursera

    ...By providing centralized resources, the repo makes it easier for students to practice concepts and replicate examples from the curriculum. It also offers a structured view of how multiple disciplines—programming, statistics, and applied data analysis—come together in a professional workflow.
    Downloads: 3 This Week
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  • 8
    Universal Java Matrix Package

    Universal Java Matrix Package

    sparse and dense matrix, linear algebra, visualization, big data

    The Universal Java Matrix Package (UJMP) is an open source Java library which provides sparse and dense matrix classes, as well as a large number of calculations for linear algebra such as matrix multiplication or matrix inverse. Operations such as mean, correlation, standard deviation, replacement of missing values or the calculation of mutual information are supported, too. The Universal Java Matrix Package provides various visualization methods, import and export filters for a large...
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  • 9
    WOLFGANG

    WOLFGANG

    Editor for Petri nets

    Wolfgang is a lightweight tool that allows users to easily create and edit Petri nets and check them against general and workflow specific net properties. Specifically, Wolfgang supports full PNML conform editing functionality of Place-Transition Nets (P/T-Nets) and Colored Petri Nets (CPN) as they are defined in the SEPIA package. Its simple and easy to use interface allows to quickly create Petri nets from scratch, edit them graphically in many ways, store and even export them as PDFs. ...
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  • 10
    GeoKettle
    GeoKettle is a powerful, metadata-driven spatial ETL (Extract, Transform and Load) tool dedicated to the integration of different data sources for building and updating geospatial databases, data warehouses and services.
    Downloads: 5 This Week
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  • 11

    iMir

    Integrated pipeline for HT miRNA-Seq data analysis

    Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular pipeline, called iMir, integrating multiple open source modules and resource in an automated workflow, devising different statistical approaches to analyze data rigorously. iMir comprises also a Graphical User Interface (GUI), so that the pipeline is particularly suited for biologist and early stage bioinformaticians and produces both graphics and text outputs.
    Downloads: 0 This Week
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  • 12
    ETU SQL for Oracle

    ETU SQL for Oracle

    Powerful tool for data analysis and editing

    Changelog (Version 7 - Update 1) New Discard Partialy Changes New Edit Row in Window New List of User Connections New Show Image on Form New Quickly View of Cell Values Download also: 1) ETU SQL for MS SQL : https://sourceforge.net/projects/etusqltango/ 2) ETU SQL for MySQL : https://sourceforge.net/projects/etusqlformysql/ 3) ETU SQL for DB2: https://sourceforge.net/projects/etusqlfordb2/ Damián Ezequiel Ortiz - 2014
    Downloads: 0 This Week
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  • 13
    ETU SQL for MySQL

    ETU SQL for MySQL

    Powerful tool for data analysis and editing

    Changelog (Version 7 - Update 1) New Discard Partialy Changes New Edit Row in Window New List of User Connections New Show Image on Form New Quickly View of Cell Values Download also: 1) ETU SQL for MS SQL : https://sourceforge.net/projects/etusqltango/ 2) ETU SQL for Oracle: https://sourceforge.net/projects/etusqlfororacle/ 3) ETU SQL for DB2: https://sourceforge.net/projects/etusqlfordb2/ 4) ETU SQL for PostgreSQL: https://sourceforge.net/projects/etusqlforpostegresql/
    Downloads: 0 This Week
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  • 14
    ETU SQL for PostgreSQL

    ETU SQL for PostgreSQL

    Powerful tool for data analysis and editing

    Changelog (Version 7 - Update 1) New Discard Partialy Changes New Edit Row in Window New List of User Connections New Show Image on Form New Quickly View of Cell Values Download also : 1) ETU SQL for MySQL: https://sourceforge.net/projects/etusqlformysql/ 2) ETU SQL for Oracle: https://sourceforge.net/projects/etusqlfororacle/ 3) ETU SQL for DB2: https://sourceforge.net/projects/etusqlfordb2/ 4) ETU SQL for MS SQL Server: https://sourceforge.net/projects/etusqltango/
    Downloads: 0 This Week
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  • 15
    ETU SQL for DB2

    ETU SQL for DB2

    Powerful tool for data analysis and editing

    Changelog (Version 7 - Update 1) New Discard Partialy Changes New Edit Row in Window New List of User Connections New Show Image on Form New Quickly View of Cell Values Download also : 1) ETU SQL for MySQL: https://sourceforge.net/projects/etusqlformysql/ 2) ETU SQL for Oracle: https://sourceforge.net/projects/etusqlfororacle/ 3) ETU SQL for MS SQL Server: https://sourceforge.net/projects/etusqltango/
    Downloads: 0 This Week
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  • 16
    A command-line interface for the OpenGroupware Coils collaboration platform and OIE workflow solution. Using snurtle you can manage and examine the content of your Coils server as well as manage workflows all from a convenient command line interface
    Downloads: 0 This Week
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  • 17
    ServiceNow Data Mart Loader

    ServiceNow Data Mart Loader

    ServiceNow Data Mart Loader (a.k.a. ServiceNow Data Pump)

    ...ServiceNow DataPump) is a Java application which uses ServiceNow’s Direct Web Services (SOAP) API to extract meta-data and data from your Service-now ITSM instance. The application automatically creates and maintains tables in an Oracle or MySQL database. Please view the Wiki Quick Start Guide for instructions. NOTE: This project has been rehosted on github (see https://github.com/gflewis/sndml). The updated version has been tested with Geneva and Helsinki, but the GUI is no longer supported.
    Downloads: 0 This Week
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  • 18

    DMETANALYZER

    A tool for supporting pharmacogenomics data analysis

    We developed DMET-Analyzer a tool for the automatic association analysis among the variation of the patient genomes and the clinical conditions of patients, i.e. the different response to drugs. The proposed system allows: (i) to automatize the workflow of analysis of DMET-SNP data avoiding the use of multiple tools; (ii) the automatic annotation of DMET-SNP data and the search in existing databases of SNPs (e.g. dbSNP), (iii) the association of SNP with pathway through the search in PharmaKGB, a major knowledge base for pharmacogenomic studies. DMET-Analyzer has a simple graphical user interface that allows users (doctors/biologists) to upload and analyse DMET files produced by Affymetrix DMET-Console in an interactive way.
    Downloads: 0 This Week
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  • 19
    Toolsverse ETL Framework

    Toolsverse ETL Framework

    Open source Extract Transform Load engine written in Java

    ETL Framework is a standalone Extract Transform Load engine written in Java. It includes executables for all major platforms and can be easily integrated into other applications. Key Features: * embeddable, open source and free * fast and scalable * uses target database features to do transformations and loads * manual and automatic data mapping * data streaming * bulk data loads * data quality features using SQL, JavaScript? and regex * data transformations Requirements *...
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  • 20
    Misc scripts and utilities related to Oracle Warehouse Builder ETL (Tcl scripts, OWB Expert, project samples, etc.)
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  • 21
    An semantic editor for describing public administration services. Produces ontologies containing a workflow description in owl notation. Can be used for modelling processes in different fields, but was originally focused on semantically describing government services with their corresponding documents, fees and other information items. Launch the editor with Java Web Start at http://ri.tdf.lv
    Downloads: 0 This Week
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  • 22
    Intrepid Bioinformatic's Integrative Genomics Viewer (IGV) modifications for viewing NGS files on IGV with data located on remote servers, accessed by web services.
    Downloads: 0 This Week
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  • 23
    Web2.0 Interface for Database Administration
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  • 24
    Apatar Data Integration/ETL
    Apatar is an open source Extract, Transform, and Load (ETL) project. Modular architecture delivers 1. Visual job designer/mapping 2. Connectivity to all major data sources 3. Flexible Deployment Options (GUI, or server engine with JVM, or embedded).
    Downloads: 4 This Week
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  • 25
    REST API for XML and HTML schema-less query and recomposition.
    Downloads: 0 This Week
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