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The final build of this software now is distributed in R, embedded in "RedeR': an R/Bioconductor package for hierarchical and nested network analysis... more about RedeR: http://bioconductor.org/packages/2.9/bioc/html/RedeR.html
XIForge is a team of IT volunteer to explore new free open source technology framework and platform. We focus Pentaho and OpenBravo ERP. Our current hosted project includes Pentaho Data Integration Parse JSON String plugin. Team founder is Reid Lai.
JBELT is a collection of procedure to create a PLM system oriented to connect the CAD application to the ERP database. Based on the web. The engine are JBoss, PostgreSQL and developed in Java on JBoss Seam framework.
ProteinShop is an interactive protein manipulation tool. Users apply their knowledge and intuition to quickly create a set of protein configurations that can be subjected to local or global optimization. More information at http://proteinshop.org
QuickFlash is a C++-based analysis library for data files generated by the Flash hydrodynamics code. It provides high-performance access to large datasets in low memory situations and other restrictive environments.
Apatar is an open source Extract, Transform, and Load (ETL) project. Modular architecture delivers 1. Visual job designer/mapping 2. Connectivity to all major data sources 3. Flexible Deployment Options (GUI, or server engine with JVM, or embedded).
The repository has been moved to: https://github.com/wojdyr/fityk. Fityk is nonlinear curve-fitting and data analysis software. It is specialized in fitting peaks (bell-shaped functions like Gaussian, Loretzian, Pearson7, Voigt) to experimental data.
CNV-WebStore is an integrated platform to analyse, store, visualise and interpret CopyNumber Variation data. Analysis is supported for Illumina data, all CNV-reports and raw data can be imported after third-party analysis. Contact system admin at http://cnv-webstore.uantwerpen.be for installation scripts
Gaphor is a UML modeling environment written in Python. Gaphor is small and very extensible.
The repository is located at http://github.com/gaphor/gaphor.
qliss3d renders 3d-Lissajous-figures (figures made of a different sine functions for each dimension) with a Qt interface. You can look at the figures from any viewing position you like and even "listen" to the sound of the figures.
CCVisualizer is a multiplatform Closed Caption or Subtitle visualizer for movies or films (es Youtube, Megavideo). By downloading the movie's SRT file, it is possible to visualize it, to pause and to manually align video and text.
LaCor is intended for physical data analysis in High Energy Physics field.
It was originally designed to aid in lambda hyperon correlations research in the Selex@FNAL experiment, but it should be useful for similar studies.
MXQuery is a low-footprint implementation of XQuery 1.0, XQuery Update 1.0, XQuery Fulltext 1.0 and XQuery Scripting 1.0 as well as a subset of XQuery 1.1 (windowing, try/catch). It provides extensions to do data stream processing/CEP and SOAP/REST
PolyViz is a tool for visualizing n-dimensional polyhedra. Motivated by the difficulty of reasoning about the iteration spaces of nested loops with many levels, PolyViz allows users to visualize polyhedral representations of those iteration spaces.
easyDE is an Enterprise Business Intelligence platform that facilitates timely and effective business decision for companies to gain competitive advantage. Allow a wide range of end-users to quickly deploy rich analyses with a single integrated product.
charting application for fertility awareness, e.g. symptothermal observation Anwendung zur Aufzeichnung von Zykluskurven im Rahmen der Natürlichen Familienplanung, z.B. anhand der symptothermalen Methode
GODASM is the brief of ".Gff Organized Data Analysis System for Microarray Studies". Private programs, GODA system, had been successful developed in 2008 at CGMH,Taiwan. Now the project will transfer GODAs to open-source based system.
Web Geostatistics is an application that allows you to visualize data from various sources in a 3D environment. The main goal is to look nice and to produce simple but effective statistics of any kind of data that has an associated time and location.
Web based tool for showing RRDtool graphs and other statistics. Something like syweb from symon package, but more customizable with Smarty templates for graphs and screens.
The project is for developing libraries for visualizing biological sequence data on the web. The libraries are written in C and currently use a language (lex/yacc) based front end for presenting features on genomes, contigs, or any type of sequence.
MVPaa has merged into the automatic analysis project on gihub:
https://github.com/rhodricusack/automaticanalysis
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MVPaa is a MVPA (Multi-Voxel Pattern Analysis) package made for the automatic analysis (http://www.cambridgeneuroimaging.com/aawiki) package.