Showing 563 open source projects for "pam-python"

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  • 1
    QUAST

    QUAST

    Quality Assessment Tool for Genome Assemblies

    QUAST performs fast and convenient quality evaluation and comparison of genome assemblies. It is maintained by the Gurevich lab at HIPS (https://helmholtz-hips.de/en/hmsb). For the most up-to-date description, please visit http://quast.sf.net. Below are just some highlights. QUAST computes several well-known metrics, including contig accuracy, the number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper and manual). A...
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    Downloads: 43 This Week
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  • 2
    Datapipe

    Datapipe

    Real-time, incremental ETL library for ML with record-level depend

    Datapipe is a real-time, incremental ETL library for Python with record-level dependency tracking. Datapipe is designed to streamline the creation of data processing pipelines. It excels in scenarios where data is continuously changing, requiring pipelines to adapt and process only the modified data efficiently. This library tracks dependencies for each record in the pipeline, ensuring minimal and efficient data processing.
    Downloads: 1 This Week
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  • 3
    Autoplot

    Autoplot

    Autoplot is an interactive browser for data on the web

    Autoplot is an interactive browser for data on the web. Give Autoplot a URL or local file name and it creates a sensible plot of the data. Autoplot allows you to interactively browse data stored in ascii, .cdf, netcdf, and many other formats. Autoplot's source has been moved to GitHub. Thanks to SourceForge for many years of hosting!
    Downloads: 10 This Week
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  • 4
    Algorithm Visualizer

    Algorithm Visualizer

    Interactive Online Platform that Visualizes Algorithms from Code

    ...The project is intentionally informal and educational: it’s meant for experimentation, learning language-interop, and having fun rather than production-grade automation. Many implementations exist across languages (shell, Ruby, Python, Node, PowerShell, Go, Java, and more) and contributors are encouraged to add further
    Downloads: 4 This Week
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    Uranie

    Uranie

    Uranie is CEA's uncertainty analysis platform, based on ROOT

    ...It provides various tools for: - data analysis - sampling - statistical modeling - optimisation - sensitivity analysis - uncertainty analysis - running code on high performance computers - etc. Thanks to ROOT, it is easily scriptable in CINT (c++ like syntax) and Python. Is is available both for Unix and Windows platforms (a dedicated platform archive is available on request). Note : if you have downloaded version 3.12 before the 8th of february, a patch exists for a minor bug on TOutputFileKey file, don't hesitate to ask us.
    Downloads: 4 This Week
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  • 6
    xrayutilities

    xrayutilities

    a package with useful scripts for X-ray diffraction physicists

    xrayutilities is a python package used to analyze x-ray diffraction data. It can support with performing diffraction experiments and used for common steps in the data analysis. It can read experimental data from several data formats (spec, edf, xrdml, ...); convert them to reciprocal space for arbitrary goniometer geometries and different detector systems (point, linear as well as area detectors); for further processing the data can be gridded (transformed to a regular grid). ...
    Downloads: 1 This Week
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  • 7
    sadsa

    sadsa

    SADSA (Software Application for Data Science and Analytics)

    SADSA (Software Application for Data Science and Analytics) is a Python-based desktop application designed to simplify statistical analysis, machine learning, and data visualization for students, researchers, and data professionals. Built using Python for the GUI, SADSA provides a menu-driven interface for handling datasets, applying transformations, running advanced statistical tests, machine learning algorithms, and generating insightful plots — all without writing code.
    Downloads: 0 This Week
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  • 8
    OpenPTV

    OpenPTV

    OpenPTV

    OpenPTV is an abbreviation of the open source particle tracking velocimetry. This is an open source framework, developed jointly by academic institutions, that deals primarily with the three-dimensional particle tracking experiments in complex and turbulent flows. More about 3D-PTV on Wikipedia and links from our website: http://www.openptv.net
    Downloads: 1 This Week
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  • 9
    relax

    relax

    Molecular dynamics by NMR data analysis

    The software package 'relax' is designed for the study of molecular dynamics through the analysis of experimental NMR data. Organic molecules, proteins, RNA, DNA, sugars, and other biomolecules are all supported. It supports exponential curve fitting for the calculation of the R1 and R2 relaxation rates, calculation of the NOE, reduced spectral density mapping, the Lipari and Szabo model-free analysis, study of domain motions via the N-state model and frame order dynamics theories using...
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    Downloads: 6 This Week
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  • 10
    EllipsisNotation.jl

    EllipsisNotation.jl

    Julia-based implementation of ellipsis array indexing notation

    Julia-based implementation of ellipsis array indexing notation. This implements the notation .. for indexing arrays. It's similar to Python, in that it means "all the columns before (or after)". Note: .. slurps dimensions greedily, meaning that the first occurrence of .. in an index expression creates as many slices as possible. Other instances of .. afterward are treated simply as slices. Usually, you should only use one instance of .. in an indexing expression to avoid possible confusion.
    Downloads: 0 This Week
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  • 11
    SMILI

    SMILI

    Scientific Visualisation Made Easy

    The Simple Medical Imaging Library Interface (SMILI), pronounced 'smilie', is an open-source, light-weight and easy-to-use medical imaging viewer and library for all major operating systems. The main sMILX application features for viewing n-D images, vector images, DICOMs, anonymizing, shape analysis and models/surfaces with easy drag and drop functions. It also features a number of standard processing algorithms for smoothing, thresholding, masking etc. images and models, both with...
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    Downloads: 4 This Week
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  • 12
    gravitino

    gravitino

    Unified metadata lake for data & AI assets.

    Apache Gravitino is a high-performance, geo-distributed, and federated metadata lake. It manages metadata directly in different sources, types, and regions, providing users with unified metadata access for data and AI assets.
    Downloads: 0 This Week
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  • 13
    TensorFlow.NET

    TensorFlow.NET

    .NET Standard bindings for Google's TensorFlow for developing models

    ...Since the APIs are kept as similar as possible you can immediately adapt any existing TensorFlow code in C# or F# with a zero learning curve. Take a look at a comparison picture and see how comfortably a TensorFlow/Python script translates into a C# program with TensorFlow.NET.
    Downloads: 0 This Week
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  • 14
    Ubix Linux

    Ubix Linux

    The Pocket Datalab

    Ubix stands for Universal Business Intelligence Computing System. Ubix Linux is an open-source, Debian-based Linux distribution geared towards data acquisition, transformation, analysis and presentation. Ubix Linux purpose is to offer a tiny but versatile datalab. Ubix Linux is easily accessible, resource-efficient and completely portable on a simple USB key. Ubix Linux is a perfect toolset for learning data analysis and artificial intelligence basics on small to medium...
    Downloads: 1 This Week
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  • 15
    Signal Ranger DSP Linux Support Tools
    This project delivers Linux support (USB driver and Tools) for a Digital Signal Processor (DSP) cards of the Signal Ranger series, see http://www.softdb.com/product_dsp.shtml for details) connected to a Linux host via USB.
    Downloads: 0 This Week
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  • 16
    Quick 2d Plot

    Quick 2d Plot

    Program for live 2d graphical representation of data streams

    Quick2dPlot, or q2d for short, is an open source minimalistic plotting program designed for live 2d graphical representation of data streams. The program may be useful for plotting output of different user's application programs, especially in case when the user wants to see a plot or a number of plots during calculations or a data acquisition process. The program is command-driven and uses no widgets. Q2d is written in C, it takes advantage of SDL2 library for plotting. Currently...
    Downloads: 0 This Week
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  • 17
    libCEED

    libCEED

    CEED Library: Code for Efficient Extensible Discretizations

    libCEED provides fast algebra for element-based discretizations, designed for performance portability, run-time flexibility, and clean embedding in higher-level libraries and applications. It offers a C99 interface as well as bindings for Fortran, Python, Julia, and Rust. While our focus is on high-order finite elements, the approach is mostly algebraic and thus applicable to other discretizations in factored form, as explained in the user manual and API implementation portion of the documentation. One of the challenges with high-order methods is that a global sparse matrix is no longer a good representation of a high-order linear operator, both with respect to the FLOPs needed for its evaluation, as well as the memory transfer needed for a matvec. ...
    Downloads: 0 This Week
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  • 18

    Pytente

    Uma Ferramenta Computacional para Análise e Recuperação de Patentes

    O Pytente é uma solução avançada para automatizar o processo de coleta, armazenamento e tratamento de dados bibliográficos de patentes. A ferramenta foi projetada para simplificar a coleta de grandes volumes de dados em repositórios de acesso aberto. O Pytente garante o armazenamento estruturado das informações, além da validação e eliminação de registros duplicados. Dentre as diversas funcionalidades disponibilizadas pela ferramenta, destacam-se a extração personalizada de subconjuntos de...
    Downloads: 0 This Week
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  • 19
    odd-collector

    odd-collector

    Open-source metadata collector based on ODD Specification

    ODD Collector is a lightweight service that gathers metadata from all your data sources. Push-client is a provider which sends information directly to the central repository of the Platform. ODDRN (Open Data Discovery Resource Name) is a unique resource name that identifies entities such as data sources, data entities, dataset fields etc. It is used to build lineage and update metadata.
    Downloads: 0 This Week
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  • 20

    PDP-OmniSim

    PDP-OmniSim simulating parallel and distributed processing systems

    PDP-OmniSim 🧬 Scientific Overview PDP-OmniSim is an advanced computational framework for simulating parallel and distributed processing systems, with cutting-edge applications in computational neuroscience, distributed computing, and complex systems modeling. The framework provides researchers with robust tools for large-scale simulations of networked systems and their emergent behaviors. 🎯 Key Scientific Contributions 🔬 Interdisciplinary Research Domains Computational...
    Downloads: 1 This Week
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  • 21
    SageMaker Inference Toolkit

    SageMaker Inference Toolkit

    Serve machine learning models within a Docker container

    Serve machine learning models within a Docker container using Amazon SageMaker. Amazon SageMaker is a fully managed service for data science and machine learning (ML) workflows. You can use Amazon SageMaker to simplify the process of building, training, and deploying ML models. Once you have a trained model, you can include it in a Docker container that runs your inference code. A container provides an effectively isolated environment, ensuring a consistent runtime regardless of where the...
    Downloads: 0 This Week
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  • 22

    Python Laboratory Operations Toolkit

    many useful snippets for using python in a laboratory

    A toolkit of Python software useful in a laboratory data acquisition and analysis environment. Includes support for such protocols as VXI-11 (and its extension, LXI), Vernier LabPro (now very old), and National Instruments DSTP (now very old). Also includes data analysis and modelling tidbits. Python3 updates are on the way in the very near future for the biggest packages. the vxi11 package is fully up-to-date, although see the blog post about python 3.13
    Downloads: 0 This Week
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  • 23
    odd-collector-gcp

    odd-collector-gcp

    Open-source GCP metadata collector based on ODD Specification

    ODD Collector GCP is a lightweight service which gathers metadata from all your Google Cloud Platform data sources.
    Downloads: 0 This Week
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  • 24
    text-dedup

    text-dedup

    All-in-one text de-duplication

    text-dedup is a Python library that enables efficient deduplication of large text corpora by using MinHash and other probabilistic techniques to detect near-duplicate content. This is especially useful for NLP tasks where duplicated training data can skew model performance. text-dedup scales to billions of documents and offers tools for chunking, hashing, and comparing text efficiently with low memory usage.
    Downloads: 0 This Week
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  • 25
    DeepH-pack

    DeepH-pack

    Deep neural networks for density functional theory Hamiltonian

    DeepH-pack is the official implementation of the DeepH (Deep Hamiltonian) method described in the paper Deep-learning density functional theory Hamiltonian for efficient ab initio electronic-structure calculation and in the Research Briefing. DeepH-pack supports DFT results made by ABACUS, OpenMX, FHI-aims or SIESTA and will support HONPAS.
    Downloads: 0 This Week
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