Search Results for "gnu/linux" - Page 61
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Showing 3592 open source projects for "gnu/linux"
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular... -
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Framework for developing web-based applications (CMS, portals, ERPs etc.) It includes multilanguage support, permits management, MVC mini framework, package structure, template engine, javascript library, simple GUI library, caching system, captcha.
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New CTruck3D Rally
Free-roaming 3D racing game featuring advanced terrain rendering
It's a free-roaming 3D racing game featuring advanced terrain rendering. For small file-size, a 4k x 4k terrain is available, sampled meter-by-meter so it's very smooth. Lightweight program. This is the form in which I wished to do the first release of the terrain rendering Algorithm I have developed throughout almost 2 years. Written in C++, featuring multithreading (2 threads): a total remake of the first 3D game I did years ago, CTruck3D_Simplex and sequels. This works better,... -
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gMol
gMol molecular graphics
We've moved to https://github.com/tjod/gMol/wiki gMol is an interactive visualization system used to display and manipulate 3-dimensional models of scientific data, such as molecular structures and surfaces. It contains both OpenGL and web browser widgets that enable flexible user interfaces. -
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OVATION Prime
Seasonal model of the diffuse, monoenergetic, proton, and wave aurora.
OVATION Prime is a seasonal model of the diffuse, monoenergetic, proton, and wave aurora. The OVATION Prime model is written in IDL and was developed at the Johns Hopkins Applied Physics Laboratory (JHU-APL) by Patrick Newell and co-workers. This current version includes updates to the retrospective and real time components, several efficiency enhancements and a user configuration as implemented by Rob Redmon and Janet Machol of NOAA. This is a community model. Users are invited to... -
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PIHMgis is a “tightly-coupled” GIS interface to Penn State Integrated Hydrologic Model (PIHM). It is open source, platform independent and extensible. The “tightly-coupled” integrated GIS interface to PIHM has been created in the Open Source QGIS
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MicroView is a 2D/3D image viewer and analysis tool. It is written in Python and uses VTK for all of its graphical capabilities.
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math lib for .NET. n-dim arrays, complex numbers, linear algebra, FFT, sorting, cells- and logical arrays as well as 3D plotting classes help developing algorithms on every platform supporting .NET. Sources from SVN, binaries: http://ilnumerics.net
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PRADA
PRADA : Pipeline for RNA-Sequencing Data Analysis
Massively parallel sequencing of cDNA reverse transcribed from RNA (RNASeq) provides an accurate estimate of the quantity and composition of mRNAs. To characterize the transcriptome through the analysis of RNA-seq data, we developed PRADA. PRADA focuses on the processing and analysis of gene expression estimates, supervised and unsupervised gene fusion identification, and supervised intragenic deletion identification. PRADA currently supports 7 modules to process and identify... -
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MICA-aligner
Next-generation sequencing short reads aligner based on Intel® MIC
Latest Code in GitHub: https://github.com/aquaskyline/MICA-aligner To better utilize MIC-enabled computers for NGS data analysis, we developed a new short-read aligner MICA that is optimized in view of MIC’s limitation and the extra parallelism inside each MIC core. Experiments on aligning 150bp paired-end reads show that MICA using one MIC board is ~4.85 times faster than the CPU-(multi-core)-based BWA-MEM and about the same speed as the GPU-based SOAP3-dp. Furthermore, MICA’s... -
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ETU SQL for MySQL
Powerful tool for data analysis and editing
Changelog (Version 7 - Update 1) New Discard Partialy Changes New Edit Row in Window New List of User Connections New Show Image on Form New Quickly View of Cell Values Download also: 1) ETU SQL for MS SQL : https://sourceforge.net/projects/etusqltango/ 2) ETU SQL for Oracle: https://sourceforge.net/projects/etusqlfororacle/ 3) ETU SQL for DB2: https://sourceforge.net/projects/etusqlfordb2/ 4) ETU SQL for PostgreSQL: https://sourceforge.net/projects/etusqlforpostegresql/ -
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EXIMS
EXploring Imaging Mass Spectrometry data
EXIMS: an improved data analysis pipeline based on a new peak picking method for EXploring Imaging Mass Spectrometry data. -
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Seer
Seer is a multipurpose data analysis package for Monte Carlo data.
Seer is a multipurpose data analysis package for Monte Carlo simulation data, particularly for collider physics processes. Seer reads LHCO files and performs a variety of cuts and analyses on the data for either exploratory data analysis or reproduction of experimental studies. -
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PerformNet
Queue network modelization tool
Ceci est le projet réalisé à la session d’hiver 2014 par l’équipe Expresso. L’équipe était composée de : Philippe Olivier, François Lemonnier-Lalonde, Dominique Tremblay et François Moreau. Le projet a été réalisé pour le cours de Génie logiciel orienté objet, donné par M. Jonathan Gaudreault à l'Université Laval. Le projet consistait à développer un logiciel de modélisation de réseau de files d’attente, aussi appelé un réseau de Jackson. Chaque nœud du réspeau représente une station... -
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PROPER is a package for visual evaluation of ranking classifiers for biological big data mining studies in the mathematical language MATLAB. It is an efficient tool for optimization and comparison of the state-of-the-art ranking classifiers by generating over 20 different high quality two- and three-dimensional performance curves.
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Workbench for visualizing biological networks (regulatory, interaction, and metabolic). Can be used as a front-end for BNDB datawarehouses, but also as stand-alone tool.
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SignalDiagrams
Digital/Analog signals visualization tool
A JavaFx 8 educational application that will let you visualize digital and analog signals from a binary input and let you export the chart in SVG (Everything is in progress). Digital: Bipolar, CMI, NRZ-L, NRZ-M, NRZ-S, Manchester, Manchester differential, Miller, MLT-3, pseudoternary, RZ, Unipolar. Analog: Phase, Frequency, Amplitude. -
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KETL(tm) is a production ready ETL platform. The engine is built upon an open, multi-threaded, XML-based architecture. KETL's is designed to assist in the development and deployment of data integration efforts which require ETL and scheduling
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CIPPEX is database application to manage potato and sweetpotato field and lab experiments as part CIP's (International Potato Center) research informatics toolset. It has facilities to create field books and facilitate subsequent data analysis.
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flow visualization toolbox
matlab 2D image processing GUI toolbox for flow visualization
A general flow visualization Matlab toolbox for image processing of some common planar/surface visualization techniques from PLIF (Planar laser induce fluorescence) for tracer distribution, BOS (background oriented Schlieren) for density, TSLC (Temperature sensitive liquid crystal) for thermal and PSP (Pressure sensitive paint) pressure distribution measurement. This work is part of author's PhD study, under Dr S. Zhong @ the University of Manchester's supervision, guidance and... -
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Toolboxes for SPM (http://www.fil.ion.ucl.ac.uk/spm/) developed at Freiburg Brain Imaging (http://fbi.uniklinik-freiburg.de/)
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OpenGL Mathematics (GLM) is a C++ mathematics library for 3D software based on the OpenGL Shading Language (GLSL) specification.
