Showing 3589 open source projects for "linux-debian"

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  • 1
    The Environmental Data Management System (EDMS) is a data archiving and retrieval system based on PostGresSQL RDBMS. The system is operated with the help of a suite of Matlab M-Files. Data can be queried with Web Services which are also included.
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  • 2

    ExAM-Exome_Analysis_And_Mining

    A whole exome sequencing analysis package and its graphical interface

    During the past few years, whole exome sequencing has imposed itself for genetic research, largely due to its use for detection of causative mutations responsible for Mendelian disorders. As a consequence of their power and of the rapidly decreasing cost of these technologies, massive amount of exome sequencing data are generated and becoming available to a broadening community of scientists. However, these data remain difficult to analyze and interpret by the general scientific community,...
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  • 3
    Fiji is an image processing package based on ImageJ.
    Downloads: 2 This Week
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  • 4
    Peklo is a graph editor and an environment for visualizing and comparing different algorithms for some graph-theoretic problems, e.g. flows, shortest path, minimum spanning tree.
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  • 5
    The MeVisLab Community project provides add-on modules that extend the functionality of the MeVisLab software. The modules are provided and maintained by the MeVisLab developer community and can be compiled with the public MeVisLab SDK.
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  • 6
    SSLTool
    SSLTool is a Matlab based toolbox for bioelectromagnetic data (EEG/MEG) visualization, surface Laplacian calculation and modeling. It can compute surface Laplacian on realistic head surfaces given by a triangular mesh. It has a friendly GUI.
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  • 7
    dataPumper
    The data pumper is the database tool! ... a Java command line program to copy data from a database or text file into a database / text file (with optional mailing). Make a select on Database-A and a update on Database-B, or execute a SQL statement. For IBM i (AS400) users is also a CL-Command included.
    Downloads: 0 This Week
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  • 8
    optPBN

    optPBN

    An optimization toolbox for probabilistic Boolean networks

    We introduce optPBN, a Matlab-based toolbox for the optimization of probabilistic Boolean networks (PBN) which operates under the framework of the BN/PBN toolbox from Shmulevich et al. optPBN offers an easy generation of probabilistic Boolean networks from Boolean rule-based modeling and allows for flexible measurement data integration from multiple experiments and a subsequent integrated optimization problem generation which then can be solved with different optimizers. Thereby optPBN...
    Downloads: 1 This Week
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  • 9
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  • 10
    cleap
    cleap is a a library for handling / processing / rendering 3D meshes. It uses GPU accelerated methods.
    Downloads: 1 This Week
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  • 11

    cimgexplorer

    Exploration and analysis program for (scientific) images

    CImgExplorer is an exploration and analysis program for (scientific) intensity images. It shows floating-point and integer intensity images in a false-colour display and allows range adjustment, zooming, histogram optimisation, and simple evaluation. Reads most formats using GDAL.
    Downloads: 0 This Week
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  • 12
    GOBIG
    GOBIG is a toolbox that can be used for detecting genetic variations. The project is intended to handle big data. What's more important is that it be used to detect clusters of SNP variants. It is the intention to use the toolbox with common and rare variants. To use it, for example, to find the genetic map of genes causing complex diseases.
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  • 13

    ForceReader

    Soft for force spectroscopy data analysis

    A simple Windows application for data of atomic force spectroscopy (force-distance curves) analysis. It is adopted for Veeco/Bruker Picoforce file format, but it is possible to use it for analysis of txt-table data.
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  • 14

    PNGwriter

    Easy plotting of images pixel by pixel!

    Frustrated because you want to output a high-quality image from your C++ program but haven't found an easy, direct and fast way? Try PNGwriter. Written with scientific simulations in mind, PNGwriter allows you to plot to a PNG image pixel by pixel. * * *README* * * This is the last PNGwriter release that will be hosted on SourceForge.net. Please use the following site: https://github.com/pngwriter/pngwriter/releases to find all versions of PNGwriter including and later than...
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  • 15
    Nagios is a plugin designed to send alerts based on the identification of objects or faces your server using computer vision and a simple webcam.
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  • 16
    PaPCo is modular IDL software for the analysis, distribution and display of science data products. Primarily used by the space science community but in principle suited for any time ordered data products.
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  • 17
    circlize

    circlize

    Circular visualization in R

    circlize is an R package for creating circular visualizations (plots laid out in circular coordinate systems) in a very flexible way. It implements many types of plots using circular layouts: chord diagrams, circular heatmaps, arcs/links between sectors, genomic data visualization, etc. It provides low-level drawing functions as well as high-level functions to build complex visualizations. It’s often used in genomics, network analysis, or other fields where relationships among categories or...
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  • 18

    Informatica ExecuteWorkflow

    A utility that uses Informatica Operations API

    A Java utility that uses the Informatica Operations API allowing parameter inputs, trapping of suspended workflows and ability to send an email on failure. This utility extends the functionality of the pmcmd startworkflow and starttask command. If you pass in a parameter file and individual parameters on the command line, a temporary parameter file is created that has the values from the parameter file and appends the individual parameters. The e-mail sent is in HTML format using...
    Downloads: 1 This Week
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  • 19

    Informatica Create ctl

    automate Informatica control file creation

    Createinfactl is a Java utility that enables Administrators to fully automate Informatica deployments from the command line by creating thedeployment group control XML file to be used with the pmrep command “deploydeploymentgroup”. Default settings for the control file can be overridden at the command line and works with both static and dynamic deployment groups in the repository. Please review the “Using the Deployment Control File” section in the Informatica Command Reference guide for...
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  • 20
    TinkerCell is a software for synthetic biology. The visual interface allows users to design networks using various biological "parts". Models can include modules and multiple cells. Users can program new functions using C or Python. www.tinkercell.
    Downloads: 19 This Week
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  • 21

    BEAR

    CBR Meets Big Data

    Case-based regression learner for big data. The package contains source and binary files for running BEAR's method. BEAR utilizes EAR4 and locality sensitive hashing in its implementation.
    Downloads: 1 This Week
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  • 22
    Universal Java Matrix Package

    Universal Java Matrix Package

    sparse and dense matrix, linear algebra, visualization, big data

    The Universal Java Matrix Package (UJMP) is an open source Java library which provides sparse and dense matrix classes, as well as a large number of calculations for linear algebra such as matrix multiplication or matrix inverse. Operations such as mean, correlation, standard deviation, replacement of missing values or the calculation of mutual information are supported, too. The Universal Java Matrix Package provides various visualization methods, import and export filters for a large...
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  • 23

    Relation Tags

    Source code for be able to use Relation Tags.

    Source code for be able to use Relation Tags. It is part of project VocabularyMem but can be used separately. Relation Tags are tags which can be relationed together . For example tag "Paris" and tag "France" can be relationed with a relation "is part of". This code is created from 0 and is able to define which type of relation we use, using most elemental mathematic properties. It is strongly recommended to read "Relation Tags guide for programmers". Inside source zip, also contains dialogs...
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  • 24
    UV-CDAT

    UV-CDAT

    Ultrascale Visualization Climate Data Analysis Tools

    Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT), is a powerful and complete front-end to a rich set of visual-data exploration and analysis capabilities well suited for climate-data analysis problems.
    Downloads: 1 This Week
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  • 25

    Ladder Server

    Hierarchical Data Management

    Ladder is a hierarchical data management system or an Object Oriented Database Management System (OODBMS). This demo server demonstrates the power of Ladder, a prototype built on mySQL v5.00. This implementation minimizes development costs for the full database engine while allowing developers to test of the concept.
    Downloads: 0 This Week
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