Search Results for "gnu/linux" - Page 58
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Showing 3592 open source projects for "gnu/linux"
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ExAM-Exome_Analysis_And_Mining
A whole exome sequencing analysis package and its graphical interface
During the past few years, whole exome sequencing has imposed itself for genetic research, largely due to its use for detection of causative mutations responsible for Mendelian disorders. As a consequence of their power and of the rapidly decreasing cost of these technologies, massive amount of exome sequencing data are generated and becoming available to a broadening community of scientists. However, these data remain difficult to analyze and interpret by the general scientific community,... -
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Peklo is a graph editor and an environment for visualizing and comparing different algorithms for some graph-theoretic problems, e.g. flows, shortest path, minimum spanning tree.
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Argunet
argument map editor for analyzing and visualizing complex debates
Argunet is a client-server software for computer-supported argument visualization (CSAV). Reconstructed debates are visualized as argument maps and can be shared through the Argunet Server. -
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============================= THIS CODE IS DEPRECATED ============================= For updated information about MTSA visit: http://mtsa.dc.uba.ar
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Phanto_maJ
build three dimensional structure
PhantomaJ is a software which aims to help users designing complexe three dimensional structures and building phantom banks. This software, implemented as an ImageJ plug-in, has been designed to be intuitive. PhantomaJ is thus "ready to use" for most users, but advanced users can choose to modify specific parameters such as intersection mode, intensity decrease function or virtual real three dimension. In addition, adding a new "basic form" consiste for advanced users to write two short... -
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The MeVisLab Community project provides add-on modules that extend the functionality of the MeVisLab software. The modules are provided and maintained by the MeVisLab developer community and can be compiled with the public MeVisLab SDK.
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The Environmental Data Management System (EDMS) is a data archiving and retrieval system based on PostGresSQL RDBMS. The system is operated with the help of a suite of Matlab M-Files. Data can be queried with Web Services which are also included.
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The data pumper is the database tool! ... a Java command line program to copy data from a database or text file into a database / text file (with optional mailing). Make a select on Database-A and a update on Database-B, or execute a SQL statement. For IBM i (AS400) users is also a CL-Command included.
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SSLTool is a Matlab based toolbox for bioelectromagnetic data (EEG/MEG) visualization, surface Laplacian calculation and modeling. It can compute surface Laplacian on realistic head surfaces given by a triangular mesh. It has a friendly GUI.
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cleap is a a library for handling / processing / rendering 3D meshes. It uses GPU accelerated methods.
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cimgexplorer
Exploration and analysis program for (scientific) images
CImgExplorer is an exploration and analysis program for (scientific) intensity images. It shows floating-point and integer intensity images in a false-colour display and allows range adjustment, zooming, histogram optimisation, and simple evaluation. Reads most formats using GDAL. -
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ipcvis
Visualize Inter Process Communication
Small python script that can visualize Inter Process Communication on Linux. It can create a graph of TCP and Unix sockets, pipes and also process hierarchy. Short (59 sec) demo visualizing ssh client connecting to ssh server on the same Ubuntu host: http://youtu.be/8XFKwzkexQY Longer (2 min 13 sec) demo visualizing ZoneMinder surveillance solution operation (stopping, starting, enabling and viewing camera): http://youtu.be/kM7klE61Ibk Tested on Ubuntu 14.10 and Debian 7. ... -
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optPBN
An optimization toolbox for probabilistic Boolean networks
We introduce optPBN, a Matlab-based toolbox for the optimization of probabilistic Boolean networks (PBN) which operates under the framework of the BN/PBN toolbox from Shmulevich et al. optPBN offers an easy generation of probabilistic Boolean networks from Boolean rule-based modeling and allows for flexible measurement data integration from multiple experiments and a subsequent integrated optimization problem generation which then can be solved with different optimizers. Thereby optPBN... -
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PaPCo is modular IDL software for the analysis, distribution and display of science data products. Primarily used by the space science community but in principle suited for any time ordered data products.
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GOBIG is a toolbox that can be used for detecting genetic variations. The project is intended to handle big data. What's more important is that it be used to detect clusters of SNP variants. It is the intention to use the toolbox with common and rare variants. To use it, for example, to find the genetic map of genes causing complex diseases.
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ForceReader
Soft for force spectroscopy data analysis
A simple Windows application for data of atomic force spectroscopy (force-distance curves) analysis. It is adopted for Veeco/Bruker Picoforce file format, but it is possible to use it for analysis of txt-table data. -
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PNGwriter
Easy plotting of images pixel by pixel!
Frustrated because you want to output a high-quality image from your C++ program but haven't found an easy, direct and fast way? Try PNGwriter. Written with scientific simulations in mind, PNGwriter allows you to plot to a PNG image pixel by pixel. * * *README* * * This is the last PNGwriter release that will be hosted on SourceForge.net. Please use the following site: https://github.com/pngwriter/pngwriter/releases to find all versions of PNGwriter including and later than... -
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Nagios is a plugin designed to send alerts based on the identification of objects or faces your server using computer vision and a simple webcam.
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circlize
Circular visualization in R
circlize is an R package for creating circular visualizations (plots laid out in circular coordinate systems) in a very flexible way. It implements many types of plots using circular layouts: chord diagrams, circular heatmaps, arcs/links between sectors, genomic data visualization, etc. It provides low-level drawing functions as well as high-level functions to build complex visualizations. It’s often used in genomics, network analysis, or other fields where relationships among categories or... -
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Universal Java Matrix Package
sparse and dense matrix, linear algebra, visualization, big data
The Universal Java Matrix Package (UJMP) is an open source Java library which provides sparse and dense matrix classes, as well as a large number of calculations for linear algebra such as matrix multiplication or matrix inverse. Operations such as mean, correlation, standard deviation, replacement of missing values or the calculation of mutual information are supported, too. The Universal Java Matrix Package provides various visualization methods, import and export filters for a large... -
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Informatica Create ctl
automate Informatica control file creation
Createinfactl is a Java utility that enables Administrators to fully automate Informatica deployments from the command line by creating thedeployment group control XML file to be used with the pmrep command “deploydeploymentgroup”. Default settings for the control file can be overridden at the command line and works with both static and dynamic deployment groups in the repository. Please review the “Using the Deployment Control File” section in the Informatica Command Reference guide for... -
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Informatica ExecuteWorkflow
A utility that uses Informatica Operations API
A Java utility that uses the Informatica Operations API allowing parameter inputs, trapping of suspended workflows and ability to send an email on failure. This utility extends the functionality of the pmcmd startworkflow and starttask command. If you pass in a parameter file and individual parameters on the command line, a temporary parameter file is created that has the values from the parameter file and appends the individual parameters. The e-mail sent is in HTML format using... -
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TinkerCell is a software for synthetic biology. The visual interface allows users to design networks using various biological "parts". Models can include modules and multiple cells. Users can program new functions using C or Python. www.tinkercell.
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BEAR
CBR Meets Big Data
Case-based regression learner for big data. The package contains source and binary files for running BEAR's method. BEAR utilizes EAR4 and locality sensitive hashing in its implementation.
