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OrthoInspector is a new software system for orthology/paralogy analysis. Its purpose is to facilitate the installation and the maintenance of a database describing orthology/inparalogy relations and to provide tools to exploit these data.
LogsGrep is a unique, grep-like utility designed specifically to target log files containing multi-line entries.
The primary target is Java log files (Log4J, common, ...), where it is very common to have multiline log entries (for example log entries with a stacktrace).
It follows Unix philosophy, does only its primary job and expects its input to be generated by other more advanced tools (tail, cat, type, find...);
There is no goal to be compatible with Unix grep.
LogsGrep is...
InTml is a language and tools for Virtual and Mixed Reality development. It adds a component-based, reusable architecture to MR apps on top of open technologies such as VRJuggler, VRPN, and OpenSG. Soon: C++ and Java distributions, eclipse plugin.
CNV-WebStore is an integrated platform to analyse, store, visualise and interpret CopyNumber Variation data. Analysis is supported for Illumina data, all CNV-reports and raw data can be imported after third-party analysis. Contact systemadmin at http://cnv-webstore.uantwerpen.be for installation scripts
--UPDATE-- New Version is now integrated in the official PyMOL plugin repository! --UPDATE--
The BNI (Beyond Normal Interaction)- Tools is a plug in for the PyMOL molecular visualization system which adds additional functionalities and presets to the PyMOL GUI and also adds useful extended commands.
DataSync Suite is an open source platform for integrating tools like Zimbra, SugarCRM, and Drupal. The tool is focused on a single sign-on, application data integration, and fast, flexible deployment.
Xlt, the LessTif/Motif Extension library, is a set of widgets that make programming
with the Motif API easier as it adds a set of frequently used tools.
Jipes provides open source Java APIs deeply integrated into the Oracle RDBMS, including an Ant task for building and exporting database objects. A Java Data Cartridge replacing database links is also in process.
FElt is an open source system for finite element analysis, primarily for mechanical problems. FElt includes command line tools, an X11 interface for pre- and post-processing, and a Windows editor interface with some post-processing capabilities.
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Software tools for building interactive information visualization applications. Prefuse supports a rich set of features for data modeling, visualization, animation, and interaction for both Java (prefuse) and Flash (prefuse flare).
Open Source Remote Sensing OSSIM project, pronounced "awesome", will leverage existing algorithms/tools/packages from the open source community in construction of the ultimate Remote Sensing/Image Processing/GIS package. osgPlanet extends OSSIM and Op
Open2Dprot is an open-source proteomics project for the development of bioinformatic tools for n-dimensional protein expression data analysis of quantified protein expression across multiple samples from research experiments.
This project aims to develop a cross platform environment for utilisation of various open source and freely available molecular dynamics and bioinformatics tools. Some extra features are included such as protein hydrophobicity and hydrophilicity plots.
The BEE Project is a suite of tools supporting Business Intelligence project implementation including ETL tool and OLAP server and a thin client. The ROLAP server ensures multipass SQL generation and powerful cache management (utilizes MySQL RDBMS).
Flow4J-Eclipse is a plugin for the eclipse IDE that enables the modelling of process flows in a drag and drop manner. Building a Flow4J project creates the flow\'s java source code and is then compiled by the JDT plugin. Uses the eclipse-gef framework.
Midas EDS is an Electronic Document Storage system used for processing and tracking files, each processor has a separate account. All inbound files are scanned and uploaded to the server where they can be tracked by admin.
Set of tools and libs for
managing structured data
in a very flexible way:
Imp./Exp. ASCII, XML, SQL,
PS, Tex/LaTex, RTF
GUI: X-Windows, MS-Windows
Interface to C++, DBs, Perl,
PHP, Java, TCP/IP
LISP-like interpreter
written in C++ using C-LIB
Thea, Tools for High-throughput Experiment Analysis, is an integrated information processing system dedicated to the annotation of data issued from classification systems with biological information coming from a knowledge base.
LMS Tools is a set of tools and libraries for administrators and users of learning management systems to perform, for example, portal integration, LMS management or usage data analysis.
JCGrid is an easy-to-use tools for real-world grid-computing. It requires only to install Java Runtime and you can easy split your cpu-intensive task among several Workstations/PC/Mac/etc. It includes support for POVRay and MandelGrid as usage examples.
the Balls Graphics Library aims to provide all the tools you
need to develop artificial worlds, including a script-driven 3D
modeler, OpenGL-based renderer, physical simulation engine,
and realistic image synthesizer.
Bloof is an infrastructure for analytical processing of version control data. The main distribution provides a GUI for visualizing the evolution of a software project. External tools can access Bloof via Java API and a XML result mechanism.